% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1cdk.ent 1cdka { CHAIN A 0.31540 -0.72410 -0.61333 30.35977 -0.94693 -0.19778 -0.25344 153.81975 0.06220 0.66072 -0.74805 22.51891 } /disk3/pdb/pdb1cki.ent 1ckia { CHAIN A 0.10968 0.90562 0.40965 -30.52904 0.95986 -0.20355 0.19299 8.62518 0.25814 0.37204 -0.89160 77.59636 } % Reading block file... Blocfile read: Length: 368 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 368 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 361 % The alignment: >1cdka (cluster A) sequence >1ckia (cluster B) sequence >space >1cdka_dssp (cluster A) secondary structure from DSSP >1ckia_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * K - G T S H E H Q H E H S H V H K H E H F H L H A H K H A H K H E H D H F H L H K H K H W H E H N S P - A - QM -- 0 0.00000 0.00000 0.00000 NE -- 0 0.00000 0.00000 0.00000 TL -- 0 0.00000 0.00000 0.00000 AR -E 0 0.00000 0.00000 0.00000 HV -E 0 0.00600 2.38500 0.26000 LG GT 1 0.46300 1.51863 4.83000 DN GT 0 0.41400 1.88876 4.34000 QR GT 1 0.64600 1.29716 6.66000 FY EE 1 0.85000 1.28220 8.70000 ER EE 1 0.88800 1.12040 9.08000 RL EE 1 0.82700 1.18246 8.47000 IG EE 1 0.70500 1.48120 7.25000 KR EE 1 0.83300 1.22844 8.53000 TK EE 1 0.86400 1.25010 8.84000 LI EE 1 0.86600 1.19003 8.86000 GG EE 1 0.82800 1.06622 8.48000 TS EE 1 0.64200 1.28784 6.62000 GG -- 1 0.45000 1.84404 4.70000 SS SS 0 0.29900 2.25947 3.19000 FF SS 0 0.30000 1.98325 3.20000 GG -S 1 0.53800 1.13509 5.58000 RD EE 1 0.88000 1.08728 9.00000 VI EE 1 0.92400 0.87296 9.44000 MY EE 1 0.91700 1.01302 9.37000 LL EE 1 0.90600 1.02042 9.26000 VG EE 1 0.92300 0.74028 9.43000 KT EE 1 0.90300 0.88417 9.23000 HD EE 1 0.83800 1.23233 8.58000 KI TT 1 0.78300 1.45492 8.03000 EA TT 1 0.79200 1.45428 8.12000 TA TT 1 0.80000 1.43288 8.20000 GG -T 1 0.83200 1.34474 8.52000 NE -E 1 0.83100 1.30338 8.51000 HE EE 1 0.85300 1.14410 8.73000 FV EE 1 0.90000 0.78365 9.20000 AA EE 1 0.91700 0.80348 9.37000 MI EE 1 0.93000 0.85437 9.50000 KK EE 1 0.91100 1.04286 9.31000 IL EE 1 0.89900 1.08094 9.19000 LE EE 1 0.82900 1.34552 8.49000 DC EE 1 0.74700 1.49159 7.67000 KV HS 1 0.52200 1.82731 5.42000 QK H- KT HT V H V H K H L T K T QK -T IH HS EP H- 0 0.02000 2.65382 0.40000 HQ H- 0 0.24800 2.22368 2.68000 TL HH 1 0.46800 1.91258 4.88000 LH HH 1 0.51200 1.91815 5.32000 NI HH 1 0.50900 1.76283 5.29000 EE HH 1 0.76600 1.05555 7.86000 KS HH 1 0.88200 1.06198 9.02000 RK HH 1 0.91600 0.84389 9.36000 II HH 1 0.91000 0.88864 9.30000 LY HH 1 0.91600 0.62076 9.36000 QK HH 1 0.86800 1.10514 8.88000 AM HH 1 0.84400 1.29083 8.64000 M S VQ -T 0 0.41600 1.61495 4.36000 NG -T 1 0.75300 1.46974 7.73000 FG -S 1 0.78200 1.36048 8.02000 PV TT 1 0.65400 1.45231 6.74000 FG TT 1 0.75000 1.22190 7.70000 LI B- 1 0.82800 1.37456 8.48000 VP -- 1 0.85300 1.32023 8.73000 KT -- 1 0.84100 1.28974 8.61000 LI EE 1 0.86600 1.10772 8.86000 ER EE 1 0.86600 1.20964 8.86000 YW EE 1 0.89800 1.06365 9.18000 SC EE 1 0.89100 1.13170 9.11000 FG EE 1 0.85900 1.10038 8.79000 KA EE 1 0.68100 1.45285 7.01000 DE -E 1 0.54400 1.85506 5.64000 NG ST 1 0.46100 1.93164 4.81000 SD ST 1 0.71000 1.24156 7.30000 NY EE 1 0.82200 1.33813 8.42000 LN EE 1 0.84200 1.27439 8.62000 YV EE 1 0.89300 1.14410 9.13000 MM EE 1 0.90900 1.04284 9.29000 VV EE 1 0.92500 0.93884 9.45000 MM EE 1 0.91100 0.98351 9.31000 EE -E 1 0.91700 0.85504 9.37000 YL -- 1 0.92200 0.89327 9.42000 V - PL T- 0 0.15700 2.12186 1.77000 GG T- 1 0.53400 1.68153 5.54000 GP -- 1 0.79500 1.30646 8.15000 ES BB 1 0.83400 1.28270 8.54000 ML HH 1 0.86000 1.05922 8.80000 FE HH 1 0.87500 0.72427 8.95000 SD HH 1 0.82600 1.25965 8.46000 HL HH 1 0.79200 1.36278 8.12000 LF HH 1 0.79500 0.91674 8.15000 RN HH 1 0.61400 1.56207 6.34000 F H RC HT 0 0.10900 2.03581 1.29000 IS HT 1 0.64200 1.46262 6.62000 GR -T 1 0.71500 1.34202 7.35000 RK S- 1 0.68300 1.37362 7.03000 FF -- 1 0.88200 0.83604 9.02000 SS -- 1 0.92700 0.93414 9.47000 EL HH 1 0.91200 1.06119 9.32000 PK HH 1 0.88100 1.08343 9.01000 HT HH 1 0.92100 0.61228 9.41000 AV HH 1 0.94500 0.71697 9.65000 RL HH 1 0.93200 0.90892 9.52000 FL HH 1 0.93400 0.91736 9.54000 YL HH 1 0.92700 0.96157 9.47000 AA HH 1 0.92400 0.98389 9.44000 AD HH 1 0.93400 0.91657 9.54000 QQ HH 1 0.91400 0.88283 9.34000 IM HH 1 0.88500 1.06373 9.05000 VI HH 1 0.91600 1.00401 9.36000 LS HH 1 0.92600 0.96324 9.46000 TR HH 1 0.91300 1.02388 9.33000 FI HH 1 0.88000 1.19053 9.00000 EE HH 1 0.88300 1.19100 9.03000 YY HH 1 0.90900 1.08696 9.29000 LI HH 1 0.88700 1.13199 9.07000 HH HH 1 0.90800 0.89721 9.28000 SS HH 1 0.88200 1.14896 9.02000 LK TT 1 0.86400 1.21649 8.84000 DN TT 1 0.89800 0.98426 9.18000 LF EE 1 0.91300 0.92207 9.33000 II EE 1 0.93900 0.61465 9.59000 YH -- 1 0.91700 0.86789 9.37000 RR -S 1 0.90300 1.01894 9.23000 DD -- 1 0.90900 1.07526 9.29000 LV -- 1 0.92000 0.98548 9.40000 KK S- 1 0.93200 0.89323 9.52000 PP GG 1 0.90700 0.94522 9.27000 ED GG 1 0.87700 1.09862 8.97000 NN GG 1 0.87900 1.19682 8.99000 LF EE 1 0.89400 1.16854 9.14000 LL EE 1 0.88200 1.18282 9.02000 IM EE 1 0.84000 1.34011 8.60000 DG -- 1 0.74100 1.41011 7.61000 QL T- G G K G K G QG TT GN ST 0 0.40000 1.87679 4.20000 YL -- 1 0.67800 1.52119 6.98000 IV EE 1 0.82300 1.15951 8.43000 QY EE 1 0.87000 1.21776 8.90000 VI EE 1 0.90000 1.14316 9.20000 TI -- 1 0.89100 1.14919 9.11000 DD -- 1 0.89900 1.03874 9.19000 FF -- 1 0.88900 1.09029 9.09000 GG TS 1 0.91300 0.78960 9.33000 FL TS 1 0.89500 0.98404 9.15000 AA -- 1 0.86100 1.17672 8.81000 KK EE 1 0.79800 1.44332 8.18000 RK EE 1 0.65800 1.47357 6.78000 VY -- R B D - A T R T T T H - Q - H B KI S- GP S- 0 0.39300 2.18815 4.13000 RY -- 0 0.28600 2.26942 3.06000 TR B- 0 0.08400 2.67086 1.04000 E B N - WK -- 0 0.18200 2.01683 2.02000 TN -S 1 0.53300 1.32733 5.53000 LL -- 0 0.30000 1.94684 3.20000 CT -- 1 0.61600 1.21846 6.36000 GG S- 1 0.91300 0.98271 9.33000 TT -- 1 0.88700 0.98837 9.07000 PA GS 1 0.82900 1.13355 8.49000 ER GS 1 0.87700 0.73385 8.97000 YY GS 1 0.86600 1.15006 8.86000 LA -- 1 0.89600 1.14516 9.16000 AS -- 1 0.88700 1.18668 9.07000 PI HH 1 0.84600 1.31446 8.66000 EN HH 1 0.87600 1.19960 8.96000 IT HH 1 0.84800 1.32144 8.68000 IH HH 1 0.82800 1.37846 8.48000 LL TT 1 0.84300 1.27384 8.63000 SG TT 1 0.79100 1.38117 8.11000 KI -B 1 0.79600 1.34968 8.16000 GE -- 1 0.75000 1.55486 7.70000 YQ B- 1 0.70200 1.61560 7.22000 NS -- 1 0.77500 1.21191 7.95000 KR TH 1 0.82400 1.20607 8.44000 AR TH 1 0.90700 1.09776 9.27000 VD HH 1 0.88900 1.04467 9.09000 DD HH 1 0.90800 0.60735 9.28000 WL HH 1 0.89600 0.84042 9.16000 WE HH 1 0.86100 0.93537 8.81000 AS HH 1 0.86400 1.09074 8.84000 LL HH 1 0.90500 0.98245 9.25000 GG HH 1 0.90900 0.71416 9.29000 VY HH 1 0.89900 0.95670 9.19000 LV HH 1 0.91000 1.01168 9.30000 IL HH 1 0.92600 0.94200 9.46000 YM HH 1 0.93700 0.85251 9.57000 EY HH 1 0.92200 0.95985 9.42000 MF HH 1 0.89400 1.11595 9.14000 AN HH 1 0.86900 1.22383 8.89000 AL HH 1 0.88200 1.18314 9.02000 GG SS 1 0.88500 1.20460 9.05000 YS SS 1 0.84500 1.13579 8.65000 PL -- 1 0.56800 1.61556 5.88000 PP ST 0 0.30300 2.15908 3.23000 FW ST 1 0.46300 1.72988 4.83000 FQ -- 1 0.61000 1.28195 6.30000 AG -- 1 0.51200 1.75097 5.32000 DL S- 1 0.46000 1.69324 4.80000 QK S- 1 0.54500 1.74066 5.65000 PY HH 1 0.65900 1.73296 6.79000 IE HH 1 0.59400 1.78107 6.14000 QR HH 1 0.76600 1.39307 7.86000 II HH 1 0.83500 1.13179 8.55000 YS HH 1 0.75300 1.45196 7.73000 EE HH 1 0.69600 1.52966 7.16000 KK HH 1 0.70000 1.50983 7.20000 IK HH 1 0.65400 1.70314 6.74000 VM HH 1 0.52600 1.92337 5.46000 SS HH GT -S KP -- I H VE -H RV -H FL -H PC -T 0 0.08900 2.35715 1.09000 SK TT 0 0.28700 2.15968 3.07000 HG TT 0 0.35600 1.96970 3.76000 FY SS 1 0.65500 1.12623 6.75000 SP -- 1 0.78100 1.31326 8.01000 SS HH 1 0.68500 1.61389 7.05000 DE HH 1 0.65900 1.70537 6.79000 LF HH 1 0.63700 1.72783 6.57000 KA HH 1 0.61600 1.76175 6.36000 DT HH 1 0.68900 1.63004 7.09000 LY HH 1 0.70300 1.51540 7.23000 LL HH 1 0.57000 1.76957 5.90000 RN HH 1 0.57600 1.82162 5.96000 NF HH 1 0.67600 1.65811 6.96000 L H L S QC -H 0 0.14000 2.22534 1.60000 VR SH 0 0.38000 2.03097 4.00000 DS SH 0 0.33600 2.23110 3.56000 LL TS 1 0.45900 2.03392 4.79000 T T K T R - FR T- GF TT 0 0.00000 3.22796 0.00000 ND ST 0 0.02600 2.60756 0.46000 LD S- 0 0.19700 2.23361 2.17000 KK T- 0 0.14000 2.44410 1.60000 DP T- 0 0.13000 2.39067 1.50000 GD T- 1 0.44700 1.58608 4.67000 VY TH 1 0.77400 1.26265 7.94000 NS HH 1 0.67200 1.63018 6.92000 DY HH 1 0.61300 1.64310 6.33000 IL HH 1 0.73500 0.90288 7.55000 KR HH 1 0.66700 1.58095 6.87000 NQ TH 1 0.69300 1.66245 7.13000 H S KL GH 0 0.29900 1.74881 3.19000 WF GH 1 0.63700 1.59214 6.57000 FR GH 1 0.71300 1.47444 7.33000 AN TH TL TH TF -H DH -H W H I H A H IR HH YQ HH QG TT RF T- KS -- 0 0.00000 3.42268 0.00000 VY S- 0 0.02000 2.25571 0.40000 ED -S 1 0.48800 1.81343 5.08000 AY -- 1 0.72200 1.49030 7.42000 PV S- F - D H W H FN -H IM -H 0 0.00000 2.88678 0.00000 PL -G 0 0.29200 1.80662 3.12000 KK -G 1 0.57200 1.73304 5.92000 FF -G 1 0.66800 1.55936 6.88000 KG ST 0 0.07100 4.51230 0.91000 GA S- 0 0.40700 4.60542 4.27000 PS T- 0 0.10100 4.62662 1.21000 G T D - T - S T N T F S D - D - Y - E - E - E - E - I - R - V - S - I S N S E - K - C S G T K G E G F G S T E T *