% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1bvc.ent 1bvc { ALL -0.19685 -0.82564 -0.52880 32.87443 -0.59285 0.52976 -0.60651 -28.82965 0.78084 0.19412 -0.59373 9.20869 } /disk3/pdb/pdb1ash.ent 1ash { ALL 0.53739 -0.56140 -0.62939 6.63966 0.51679 -0.37048 0.77180 -49.56884 -0.66643 -0.73998 0.09103 6.83342 } % Reading block file... Blocfile read: Length: 161 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 161 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 160 % The alignment: >1bvc (cluster A) sequence >1ash (cluster B) sequence >space >1bvc_dssp (cluster A) secondary structure from DSSP >1ash_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * V - L - SA -- 1 0.49100 1.96055 5.11000 EN HH 1 0.67200 1.45313 6.92000 GK HH 1 0.76700 1.38851 7.87000 ET HH 1 0.69800 1.56773 7.18000 WR HH 1 0.75700 1.29681 7.77000 QE HH 1 0.89400 0.73871 9.14000 LL HH 1 0.92100 0.87274 9.41000 VC HH 1 0.93400 0.67681 9.54000 LM HH 1 0.94300 0.79886 9.63000 HK HH 1 0.90800 0.87386 9.28000 VS HH 1 0.83700 1.08247 8.57000 WL HG 1 0.81100 1.22676 8.31000 AE HG 1 0.70200 1.56170 7.22000 KH HG 1 0.70400 1.54669 7.24000 VA HS K - V - D S T S ES TS AN TH 0 0.00000 3.07759 0.00000 DE SH 0 0.10500 2.02249 1.25000 VA HH 1 0.53800 1.86588 5.58000 AR HH 1 0.63900 1.70612 6.59000 GQ HH 1 0.70100 1.61573 7.21000 HD HH 1 0.70300 1.63476 7.23000 GG HH 1 0.74500 1.57084 7.65000 QI HH 1 0.81800 1.41790 8.38000 DD HH 1 0.81700 1.44034 8.37000 IL HH 1 0.81300 1.43253 8.33000 LY HH 1 0.83100 1.32000 8.51000 IK HH 1 0.83600 1.29510 8.56000 RH HH 1 0.86800 1.24303 8.88000 LM HH 1 0.86800 1.24109 8.88000 FF HH 1 0.83100 1.34668 8.51000 KE HH 1 0.82700 1.39906 8.47000 SN HH 1 0.79200 1.40470 8.12000 HY S- 1 0.75900 1.42224 7.79000 PP GG 1 0.85400 1.04052 8.74000 EP GG 1 0.77500 1.39539 7.95000 TL GG 1 0.88300 0.97863 9.03000 LR GG 1 0.91700 0.94523 9.37000 EK GG 1 0.90500 1.09254 9.25000 KY GG 1 0.91600 1.01815 9.36000 FF -S 1 0.85900 1.19267 8.79000 DK TT 1 0.48500 1.27770 5.05000 RS TT 0 0.19000 2.16362 2.10000 FR TT 1 0.61300 1.58734 6.33000 KE TT 1 0.66500 1.54432 6.85000 HE TT 0 0.41800 1.95880 4.38000 L - KY -- 1 0.46600 1.69074 4.86000 TT S- 1 0.68300 1.70842 7.03000 EA HH 1 0.72500 1.50655 7.45000 AE HH 1 0.76900 1.38958 7.89000 ED HH 1 0.87500 1.18010 8.95000 MV HH 1 0.89800 1.09085 9.18000 KQ HH 1 0.92500 0.93457 9.45000 AN HH 1 0.91900 0.99427 9.39000 SD -- 1 0.88300 1.14585 9.03000 EP HH 1 0.90800 0.99694 9.28000 DF HH 1 0.90400 0.96740 9.24000 LF HH 1 0.83100 1.28742 8.51000 KA HH 1 0.81500 1.37272 8.35000 KK HH 1 0.88000 1.17412 9.00000 HQ HH 1 0.89700 1.12994 9.17000 GG HH 1 0.88900 1.14264 9.09000 VQ HH 1 0.91300 0.96904 9.33000 TK HH 1 0.92300 0.90563 9.43000 VI HH 1 0.92000 0.90313 9.40000 LL HH 1 0.89000 1.14015 9.10000 TL HH 1 0.89800 1.09340 9.18000 AA HH 1 0.84100 1.28621 8.61000 LC HH 1 0.79400 1.40469 8.14000 GH HH 1 0.87000 1.06618 8.90000 AV HH 1 0.87500 1.12306 8.95000 IL HH 1 0.84800 1.30189 8.68000 LC HH 1 0.88200 1.10231 9.02000 KA HH 1 0.92200 0.67497 9.42000 KT TT 1 0.89800 0.73213 9.18000 KY TT D T D S R H GE TH HT -H 0 0.14100 2.04272 1.61000 HF -H 1 0.57500 0.92055 5.95000 EN HH 1 0.69300 1.48666 7.13000 AA HH 1 0.68200 1.55620 7.02000 EY HH 1 0.81300 1.11251 8.33000 LT HH 1 0.78800 1.35632 8.08000 KR HH 1 0.74400 1.53045 7.64000 PE HH 1 0.79500 1.35310 8.15000 LL HH 1 0.78700 1.25487 8.07000 AL HH 1 0.75800 1.33707 7.78000 QD HH 1 0.73300 1.40785 7.53000 SR HH 1 0.52100 1.84451 5.41000 HH HH 1 0.52200 1.85879 5.42000 AA HH 0 0.32100 2.16135 3.41000 TR HH 0 0.14200 2.50764 1.62000 D T KH TT 0 0.13800 1.46720 1.58000 HV T- 1 0.84400 1.03946 8.64000 KH -- 1 0.88300 0.63290 9.03000 IM -- 1 0.82500 1.25499 8.45000 PP -- 1 0.82000 1.27922 8.40000 IP HH 1 0.75400 1.33045 7.74000 KE HH 1 0.75000 1.42577 7.70000 YV HH 1 0.84800 1.26189 8.68000 LW HH 1 0.86000 1.17363 8.80000 ET HH 1 0.77000 1.47754 7.90000 FD HH 1 0.77200 1.52058 7.92000 IF HH 1 0.78700 1.44947 8.07000 SW HH 1 0.86600 1.15237 8.86000 EK HH 1 0.88300 1.11513 9.03000 AL HH 1 0.85700 1.19120 8.77000 IF HH 1 0.90600 0.88056 9.26000 IE HH 1 0.93700 0.27408 9.57000 HE HH 1 0.91600 0.68626 9.36000 VY HH 1 0.84500 1.18292 8.65000 LL HH 1 0.90000 0.98036 9.20000 HG HH 1 0.86300 1.13908 8.83000 SK HH 1 0.82400 1.26458 8.44000 RK HH 1 0.86800 1.06167 8.88000 H - P T GT TS DT T- 0 0.10000 2.22313 1.20000 FL -- 1 0.49900 1.31098 5.19000 GD -- 1 0.90300 0.83218 9.23000 AE HH 1 0.93100 0.91262 9.51000 DP HH 1 0.92600 0.84374 9.46000 AT HH 1 0.92400 0.68658 9.44000 QK HH 1 0.89500 0.99709 9.15000 GQ HH 1 0.88600 1.00122 9.06000 AA HH 1 0.91400 0.68314 9.34000 MW HH 1 0.89800 0.99089 9.18000 NH HH 1 0.85000 1.20947 8.70000 KE HH 1 0.87800 1.02505 8.98000 AI HH 1 0.86300 0.90634 8.83000 LG HH 1 0.79700 1.25018 8.17000 ER HH 1 0.82700 1.27346 8.47000 LE HH 1 0.89200 1.05231 9.12000 FF HH 1 0.89300 1.09233 9.13000 RA HH 1 0.85800 1.21353 8.78000 KK HH 1 0.86000 1.18484 8.80000 DE HH 1 0.90800 0.87921 9.28000 II HH 1 0.90500 0.97764 9.25000 AN HT 1 0.88000 1.08761 9.00000 A H K H Y H K H E H L H G T Y - Q - *