% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1btl.ent 1btl { ALL -0.89341 0.22279 -0.39013 43.51653 0.10809 0.94949 0.29463 35.28841 0.43605 0.22106 -0.87236 48.75633 } /disk3/pdb/pdb2blt.ent 2blta { CHAIN A 0.99986 -0.01196 0.01240 0.01200 0.01178 0.99982 0.01471 -0.94165 -0.01257 -0.01456 0.99981 0.71525 } % Reading block file... Blocfile read: Length: 409 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 409 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 379 % The alignment: >1btl (cluster A) sequence >2blta (cluster B) sequence >space >1btl_dssp (cluster A) secondary structure from DSSP >2blta_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * P - V - S - E H K H Q H L H HA -H PE HH EV HH 1 0.55400 1.63056 5.74000 TV HH 1 0.64200 1.45478 6.62000 LA HH 1 0.73100 1.22241 7.51000 VN HH 1 0.62500 1.58350 6.45000 KT HH 1 0.66600 1.49549 6.86000 VI HH 1 0.76100 1.09493 7.81000 KT HH 1 0.71400 1.58148 7.34000 DP HH 1 0.71900 1.64974 7.39000 AL HH 1 0.78700 1.48322 8.07000 EM HH 1 0.76800 1.55414 7.88000 DK HH 1 0.73900 1.62120 7.59000 QA HH 1 0.71900 1.66311 7.39000 LQ HT 1 0.68900 1.73038 7.09000 GS TT 1 0.67000 1.75726 6.90000 V - AP SS 1 0.60700 1.09311 6.27000 RG EE 1 0.87800 1.04339 8.98000 VM EE 1 0.83700 1.26072 8.57000 GA EE 1 0.85200 1.27815 8.72000 YV EE 1 0.90700 1.00358 9.27000 IA EE 1 0.90800 0.92686 9.28000 EV EE 1 0.90900 0.95025 9.29000 LI EE 1 0.75700 0.88976 7.77000 DY EE 0 0.35200 1.76663 3.72000 L T N T SQ TT 0 0.09400 2.26508 1.14000 GG -T 0 0.35600 1.59717 3.76000 KK -E 1 0.75900 0.87719 7.79000 I E LP EE 0 0.22100 2.25100 2.41000 EH EE 1 0.43600 1.86409 4.56000 SY EE 1 0.71100 1.52462 7.31000 Y E T E F E G E K E A E D E I T A T A T N T K E P E FV E- 0 0.00000 2.89303 0.00000 RT S- 0 0.14900 2.09365 1.69000 PP TT 1 0.57300 1.83366 5.93000 EQ TT 1 0.61900 1.71748 6.39000 ET S- 1 0.77900 1.37451 7.99000 RL -B 1 0.86300 1.17469 8.83000 FF EE 1 0.91500 0.88191 9.35000 PE EE 1 0.92600 0.52934 9.46000 ML -- 1 0.89100 1.01374 9.11000 MG GG 1 0.93900 0.65458 9.59000 SS GG 1 0.94000 0.78407 9.60000 TI GG 1 0.93300 0.48340 9.53000 FS HH 1 0.90700 0.94184 9.27000 KK HH 1 0.93300 0.74924 9.53000 VT HH 1 0.90700 0.91264 9.27000 LF HH 1 0.87800 1.01343 8.98000 LT HH 1 0.85900 0.99064 8.79000 CG HH 1 0.84800 1.11429 8.68000 GV HH 1 0.91900 0.76536 9.39000 AL HH 1 0.90200 1.03975 9.22000 VG HH 1 0.89900 1.08950 9.19000 LG HH 1 0.90200 1.06288 9.22000 SD HH 1 0.90800 0.98061 9.28000 RA HH 1 0.87800 1.19251 8.98000 II HH 1 0.89600 1.13121 9.16000 DA HH 1 0.89100 1.15280 9.11000 AR TH 1 0.88500 1.19115 9.05000 GG TT 1 0.88500 1.19385 9.05000 QE SS 1 0.87400 1.23478 8.94000 EI -- 1 0.87800 1.20163 8.98000 QS -- 1 0.87500 1.17450 8.95000 LL TT 1 0.83000 1.30750 8.50000 GD TT 1 0.89900 0.96319 9.19000 RD -S 1 0.89600 0.98365 9.16000 RA EB 1 0.88200 1.04591 9.02000 IV EG HT -G YR -G SY -T QW G- N G D G L - V - E S Y - SP -T PQ TT VL T- TT G- EG G- KK GG 0 0.00000 3.59386 0.00000 HQ -G 0 0.00200 2.48974 0.22000 LW TG 0 0.26400 2.24122 2.84000 TQ TT 0 0.12400 2.43696 1.44000 DG TT 0 0.29100 2.03232 3.11000 G - MI E- 0 0.39500 1.61340 4.15000 TR EB 1 0.82400 1.26033 8.44000 VM HH 1 0.82300 1.36758 8.43000 RL HH 1 0.82900 1.36970 8.49000 ED HH 1 0.82100 1.42239 8.41000 LL HH 1 0.83700 1.37549 8.57000 CA HH 1 0.82700 1.39700 8.47000 ST HH 1 0.80600 1.34259 8.26000 AY HT T - A S G S G - L - P - L S Q S V - P - D T E T V - T - D S N H A H S H L H L H R H F H Y H Q H N H W - Q - P - Q S W S K - P T G T AT HS IT HE 0 0.00000 3.74354 0.00000 TR HE 0 0.00000 2.77595 0.01000 ML S- 0 0.24300 2.29798 2.63000 SY -- 0 0.37500 2.02347 3.95000 DA -- 1 0.63800 1.25551 6.58000 NN HH 1 0.86500 0.62425 8.85000 TA HH 1 0.86300 0.92509 8.83000 AS HH 1 0.68500 1.38959 7.05000 AI HH 1 0.62300 1.62732 6.43000 NG HH 1 0.70600 1.49580 7.26000 LL HH 1 0.76600 1.03272 7.86000 LF HH 1 0.64100 1.52661 6.61000 LG HH 1 0.57400 1.69295 5.94000 TA HH 1 0.63300 1.38913 6.53000 L H A H V T K G P G S G TG H- IM HS 0 0.03700 2.58872 0.57000 GP T- 0 0.35900 1.65205 3.79000 GY -H 1 0.71300 1.41864 7.33000 PE HH 1 0.59000 1.65757 6.10000 KQ HH 1 0.50300 1.83770 5.23000 EA HH 1 0.64200 1.53884 6.62000 LM HH 1 0.73900 1.16269 7.59000 TT HH 1 0.61000 1.69274 6.30000 AT HH 1 0.64800 1.72062 6.68000 R H FV HT 0 0.36900 1.78108 3.89000 LL HH 1 0.63400 0.98409 6.54000 HK HH 1 0.66500 1.43747 6.85000 NP HH 1 0.45300 1.77060 4.73000 ML TH 1 0.52700 1.63890 5.47000 GK TT 1 0.82800 1.12007 8.48000 DL -- 1 0.89400 0.99441 9.14000 HD ST 1 0.91800 0.69121 9.38000 VH ST 1 0.92000 0.88079 9.40000 TT -E 1 0.90000 0.89874 9.20000 RW -E 1 0.85000 1.19045 8.70000 LI -S 1 0.68900 1.34916 7.09000 DN -S RV -- WP -- EK TT PA TT EE GT LE GG A G H G Y B A - W - G E Y E R S D S G S K S A E V E R - V - S - P - NG G- EM -T AL -T ID -H PA TH NQ TH DA -H EY -T RG T- 0 0.00000 2.68827 0.00000 DV T- 0 0.16500 1.79197 1.85000 TK EE 1 0.70500 0.85525 7.25000 TT EE 1 0.91600 0.88676 9.36000 MN -- 1 0.88600 1.04001 9.06000 PV HH 1 0.81100 1.35363 8.31000 VQ HH 1 0.75500 1.42778 7.75000 AD HH 1 0.83900 0.82515 8.59000 MM HH 1 0.83100 1.15475 8.51000 AA HH 1 0.73100 1.40130 7.51000 TN HH 1 0.77300 0.95610 7.93000 TW HH 1 0.66400 1.34647 6.84000 LV HH 1 0.58200 1.69431 6.02000 RM HH 1 0.76800 1.44140 7.88000 KA HH 1 0.71200 1.27782 7.32000 LN HH 0 0.42900 1.91388 4.49000 LM HH 0 0.36600 2.07591 3.86000 TA H- GP SG EE SG N G V - A - D S LA SH LS SH TL -H LK HH 0 0.09600 2.66878 1.16000 AQ HH 0 0.17000 2.49701 1.90000 SG HH 0 0.33200 2.19973 3.52000 RI HH 1 0.45800 1.96866 4.78000 QA HH 1 0.48200 1.94286 5.02000 QL HH 1 0.52900 1.83220 5.49000 LA HH 1 0.71100 1.35874 7.31000 IQ HT DS HS WR HE MY HE EW HE AR TE I E G T S T M E Y E Q E G - L S G S W - E E M E L E N E DW -S KP -S VV S- AE -- GA TH PN TH LT TH 0 0.00000 3.06405 0.00000 LV GH 0 0.07600 2.33574 0.96000 RV GH 1 0.44300 1.99979 4.63000 SE GH AG GH LS -T D S S H K H V H A H L T A S P - L E P E V - A E E E V E N E P E P E A E P - PP -- AV T- GK TS WA -S 0 0.00000 2.68478 0.00000 FS EE 0 0.23700 1.79852 2.57000 IW EE 1 0.70300 0.89397 7.23000 AV EE 1 0.87100 1.15104 8.91000 DH EE 1 0.91300 0.90621 9.33000 KK EE 1 0.92200 0.99606 9.42000 ST EE 1 0.88500 0.99248 9.05000 GG EE 1 0.86800 1.00858 8.88000 AS EE 1 0.84900 1.29672 8.69000 GT -- 1 0.80900 1.24133 8.29000 EG SS 1 0.75000 0.73768 7.70000 R T GG TS 0 0.35000 1.93832 3.70000 SF -- 1 0.66800 1.35500 6.88000 RG EE 1 0.87500 1.20381 8.95000 GS EE 1 0.86200 1.13934 8.82000 IY EE 1 0.85600 1.15104 8.76000 IV EE 1 0.88700 1.17018 9.07000 AA EE 1 0.87500 1.25254 8.95000 AF EE 1 0.83400 1.17144 8.54000 L E G E P S D T GI TE 0 0.00000 2.88543 0.00000 KP SG 0 0.15000 2.37303 1.70000 PE -G 1 0.47100 1.78488 4.91000 K G SQ -T 1 0.49200 1.54667 5.12000 RI EE 1 0.78700 0.99125 8.07000 IG EE 1 0.85400 1.25907 8.74000 VI EE 1 0.90500 1.02349 9.25000 VV EE 1 0.91600 1.01787 9.36000 IM EE 1 0.89400 0.98244 9.14000 YL EE 1 0.82700 1.29756 8.47000 TA EE 1 0.89900 1.08137 9.19000 TN ES G - S - Q - A S T - MT HB DS H- EY H- 0 0.06200 2.34854 0.82000 RP H- 1 0.47100 1.77212 4.91000 NN HH 1 0.50800 1.81598 5.28000 RP HH 0 0.28400 2.21407 3.04000 QA HH 0 0.40900 1.91761 4.29000 IR HH 1 0.61300 1.35220 6.33000 AV HH 1 0.46100 1.94585 4.81000 EE HH 0 0.35900 2.05779 3.79000 IA HH 1 0.62400 1.43244 6.44000 A H GY HH 0 0.37000 1.73691 3.90000 AH HH 1 0.50200 1.45232 5.22000 SI HH 0 0.40200 1.94375 4.22000 LL HH 0 0.39600 1.88665 4.16000 IE HH KA H- H T *