% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1bgl.ent 1bgla.1 { A 3 _ to A 219 _ 1.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 } /disk3/pdb/pdb1dlc.ent 1dlc.1 { _ 500 _ to _ 643 _ 0.27341 0.23805 0.93198 -59.15204 0.17081 -0.96552 0.19650 199.61365 0.94661 0.10548 -0.30464 0.13733 } % Reading block file... Blocfile read: Length: 248 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 248 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 238 % The alignment: >1bgla.1 (cluster A) sequence >1dlc.1 (cluster B) sequence >space >1bgla.1_dssp (cluster A) secondary structure from DSSP >1dlc.1_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * I - T T D T S - L H A H V H V H L H Q H R T R - D G W G E G N - P T G T V - T S Q E L E N S R - L - A - A - H - P S P - F - A - S - W B R S N S S H E H E H A H R H TF TT 0 0.00000 0.00000 0.00000 DF TT 0 0.00000 0.00000 0.00000 RN -- 0 0.00000 0.00000 0.00000 PM -E 0 0.00000 0.00000 0.00000 SI -E 0 0.00000 0.00000 0.00000 D - S S QK TS 0 0.00000 2.33799 0.05000 QK TS 0 0.37900 0.74034 3.99000 LI EE 1 0.90100 1.04798 9.21000 RT EE 1 0.90500 0.88818 9.25000 SQ EE 1 0.84300 1.21878 8.63000 LL -E 1 0.85700 1.05715 8.77000 P E NL -G 0 0.40400 2.10146 4.24000 GV EG 1 0.56600 1.80025 5.86000 EK EG 1 0.74600 1.43333 7.66000 A - WY ES 0 0.15000 2.02179 1.70000 RK EE 1 0.64500 1.30442 6.65000 FL EE 1 0.89000 0.80162 9.10000 AQ E- 1 0.89900 0.95248 9.19000 WS ET 0 0.40600 1.18381 4.26000 FG ET PA S- AS SE PV GE EV GE AA G- V S P - E G S G W G L G E T C S D - L - PG T- EP T- AR -S DF ES TT ES VG ES VG ES 0 0.00000 2.79945 0.00000 VD E- 0 0.07700 2.51292 0.97000 PI SE 0 0.28900 1.81887 3.09000 SI -E 1 0.63800 1.48664 6.58000 NQ -E 1 0.65700 1.45123 6.77000 W G Q G M G H G G T Y S D S A - P - I E Y E T E N S V S T S Y - P S I S T - V - N - P T P T F - V - P - TC SE ET -- 0 0.00000 3.36831 0.00000 NE -S 0 0.01800 2.29969 0.38000 PN -S 0 0.30900 2.00639 3.29000 TG EE 1 0.60200 1.73343 6.22000 GS EE 0 0.42100 1.98544 4.41000 CA EE 1 0.59700 1.53829 6.17000 YA EE 1 0.85100 1.01718 8.71000 ST EE 1 0.92600 0.80757 9.46000 LI EE 1 0.93100 0.86185 9.51000 TY EE 1 0.92200 0.85889 9.42000 FV E- 1 0.85900 1.15307 8.79000 NT -E 1 0.92200 0.63811 9.42000 VP -E 1 0.94100 0.80701 9.61000 DD -S 1 0.91700 0.80137 9.37000 E H S H WV H- 0 0.10100 2.07141 1.21000 LS HS 0 0.21800 2.21413 2.38000 QY HS 0 0.25200 1.83259 2.72000 ES S- 0 0.09000 2.53483 1.10000 GQ S- 0 0.22900 2.23224 2.49000 QK EE 1 0.55500 1.71953 5.75000 TY EE 1 0.76000 1.38202 7.80000 RR EE 1 0.75700 1.48101 7.77000 IA EE 1 0.82400 1.40582 8.44000 IR EE 1 0.83000 1.26368 8.50000 FI EE 1 0.80400 1.09359 8.24000 DH SE 1 0.71400 1.54935 7.34000 GY -E 0 0.41200 1.47894 4.32000 VA -E 0 0.09700 2.43327 1.17000 S E T S S S NQ B- SI SE 0 0.25400 1.64593 2.74000 AT EE 1 0.79400 1.39647 8.14000 FF EE 1 0.78400 1.48475 8.04000 HT EE 1 0.81200 1.40923 8.32000 LL EE 1 0.83700 1.27489 8.57000 WS EE 1 0.84300 0.98404 8.63000 CL EE 1 0.70000 1.23720 7.20000 ND TT 1 0.57000 1.73117 5.90000 GG TT 1 0.62700 1.78295 6.47000 RA EE 1 0.71400 1.51244 7.34000 WP EE 1 0.73700 1.24107 7.57000 VF EE 1 0.75100 1.00948 7.71000 GN EE 1 0.67800 1.44779 6.98000 YQ EE 1 0.80800 1.11396 8.28000 GY EE 1 0.83300 1.28889 8.53000 QY EE 1 0.74600 1.41591 7.66000 DF -E 1 0.62800 1.45940 6.48000 SD T- 0 0.31100 1.94766 3.31000 RK T- LT S- I - N - K T G T D - T - L - T - Y G N G S G F - N E L E A E PS -E SF E- ES ES 0 0.29100 2.21202 3.11000 FT ES 0 0.37600 2.01828 3.96000 DP E- 1 0.65500 1.30496 6.75000 L - SF TE 0 0.24400 1.86202 2.64000 AE TE 0 0.34300 1.86105 3.63000 FL T- 0 0.40300 2.02018 4.23000 LS -- 0 0.30900 1.64420 3.29000 R - A S G S EG -- 0 0.01200 2.50877 0.32000 NN ES 0 0.23300 0.95523 2.53000 RN EE 1 0.89600 0.98917 9.16000 LL EE 1 0.91100 0.69474 9.31000 AQ EE 1 0.90700 1.01624 9.27000 VI EE 1 0.87400 1.16652 8.94000 MG EE 1 0.86800 1.17163 8.88000 VV EE 1 0.82800 1.15479 8.48000 LT EE RG S- WL -- S - D G G G S G Y G L G E B D - Q - D S MS E- WA ET RG ET MD -- SK -- 0 0.41000 1.50683 4.30000 GV BE 1 0.44900 1.78167 4.69000 IY -E 0 0.26300 2.10796 2.83000 FI -E 1 0.58500 1.47165 6.05000 RD SE 1 0.58800 1.79718 6.08000 DK -E 1 0.67100 1.44965 6.91000 VI EE 1 0.80400 1.01243 8.24000 SE EE 1 0.91200 1.01928 9.32000 LF EE 1 0.91100 1.07340 9.31000 LI EE 1 0.87900 1.18643 8.99000 HP EE 1 0.78700 1.10034 8.07000 K E P - *