% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1bbp.ent 1bbpa { CHAIN A -0.12296 0.71205 0.69125 7.22063 -0.60418 -0.60628 0.51711 71.79719 0.78730 -0.35404 0.50475 13.06427 } /disk3/pdb/pdb1cbi.ent 1cbia { CHAIN A -0.86882 0.47468 0.14109 -4.04099 -0.32459 -0.33064 -0.88618 117.86578 -0.37397 -0.81570 0.44129 92.27736 } % Reading block file... Blocfile read: Length: 203 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 203 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 188 % The alignment: >1bbpa (cluster A) sequence >1cbia (cluster B) sequence >space >1bbpa_dssp (cluster A) secondary structure from DSSP >1cbia_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * N - V E Y E H E D E G S A S C - P - E - V - K - P - V - D S N - F - D - W G SP G- NN G- 0 0.26300 1.43570 2.83000 YF -S 1 0.61400 1.71904 6.34000 HA -- 1 0.78900 1.37371 8.09000 GG EE 1 0.71900 1.51695 7.39000 KT EE 1 0.45700 1.95753 4.77000 WW EE 0 0.36000 2.18172 3.80000 WK EE 0 0.28900 2.34222 3.09000 EM EE VR EE AS EE KS EE YE -E PN -S F H D H E H L H L H K H A H L T G T V - N - A H M H L H R H NK -H SV SH VA TH EV TH KA TH YA TH GA -T KS ET 1 0.53600 1.59805 5.56000 CK ES 0 0.31500 2.08135 3.35000 GP E- 0 0.29500 2.27426 3.15000 WH EE 0 0.30700 2.23717 3.27000 AV EE 1 0.51600 1.83829 5.36000 EE EE 1 0.70600 1.49350 7.26000 YI EE 1 0.86500 1.05227 8.85000 TR EE 1 0.81400 1.01814 8.34000 PQ EE 1 0.60500 1.57924 6.25000 ED -E 1 0.48700 1.89821 5.07000 GG ST 0 0.35000 2.14159 3.70000 KD ST 0 0.40700 1.94020 4.27000 SQ -E 1 0.71900 1.23042 7.39000 VF EE 1 0.81900 1.38508 8.39000 KY EE 1 0.86200 1.19593 8.82000 VI EE 1 0.82700 1.17421 8.47000 SK EE 1 0.81600 1.11269 8.36000 NT EE 1 0.59000 1.54006 6.10000 YS EE 0 0.28600 2.03593 3.06000 H E V E I E H T GT T- 0 0.00000 3.02620 0.00000 KT ES 0 0.00100 2.70153 0.21000 EV ES 0 0.03500 2.44337 0.55000 YR E- 0 0.41200 2.02784 4.32000 FT EE 1 0.52100 1.78058 5.41000 IT EE 1 0.72200 1.06280 7.42000 EE EE 1 0.87700 0.67010 8.97000 GI EE 1 0.81300 1.24590 8.33000 TN EE 1 0.82000 0.93512 8.40000 AF EE 1 0.72600 1.41242 7.46000 YK EE 1 0.82300 1.08782 8.43000 PV ET 1 0.67100 1.37669 6.91000 V S G S D - S T K T I S G S KG ET 0 0.12400 2.11384 1.44000 IE ES 0 0.10100 2.36598 1.21000 YG E- 0 0.26600 2.08653 2.86000 HF EE 0 0.24400 2.25521 2.64000 KE EE 0 0.23500 2.28866 2.55000 LE EE TE EE YT E- V T GD TT GG TS VR E- TK EE 0 0.00000 3.11585 0.00000 KC EE 0 0.03500 2.80213 0.55000 ER EE 0 0.07200 2.44915 0.92000 NS EE 0 0.34000 1.73137 3.60000 VL EE 1 0.60300 1.44291 6.23000 FP EE 0 0.39800 1.89701 4.18000 NT EE 0 0.32000 2.25119 3.40000 VW EE 0 0.28500 2.37433 3.05000 LE EE S E T E D - NN SE KE ST NN ST 0 0.08900 2.73158 1.09000 YK EE 0 0.13800 2.61490 1.58000 II EE 0 0.22000 2.45520 2.40000 IH EE 0 0.18800 2.49221 2.08000 GC EE 0 0.33600 2.17577 3.56000 YT EE 0 0.38900 2.04380 4.09000 YQ EE 1 0.58700 1.61244 6.07000 CT EE 1 0.61200 1.75614 6.32000 KL EE 1 0.63500 1.40547 6.55000 YL ES 0 0.31400 2.11035 3.34000 DE ES E T D T K T KG TS GD E- 0 0.26800 1.59172 2.88000 HG E- 0 0.29200 1.90261 3.12000 QP E- 0 0.30700 1.89817 3.27000 DK E- 1 0.46600 1.73646 4.86000 FT EE 1 0.55100 1.72866 5.71000 VY EE 1 0.44800 1.95313 4.68000 WW EE 1 0.43100 2.01858 4.51000 VT EE 0 0.18600 2.44246 2.06000 LR EE 0 0.33600 2.18564 3.56000 SE EE 0 0.20200 2.46734 2.22000 RL SE SA SE KN ST VD ST LE -E T - G H E H A H K H T H A H V H E H N H YL HE LI HE IL HE GT HE SF -E PG SE 0 0.00000 3.27351 0.00000 VA SE 0 0.00000 2.89247 0.07000 VD -T 0 0.11000 2.35921 1.30000 D - S G QD GT 0 0.02500 2.49293 0.45000 KV GE 0 0.42400 1.50741 4.44000 LV -E 1 0.61000 1.75031 6.30000 VC EE 1 0.45000 2.02067 4.70000 YT EE 0 0.29500 2.29656 3.15000 SR -E DI -E 0 0.00000 3.17720 0.00000 FY -E 0 0.02600 2.72105 0.46000 SV -E 0 0.00000 0.00000 0.00000 ER HE 0 0.00000 0.00000 0.00000 A H A H C H K - V - *