% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1aht.ent 1ahtlh { CHAIN L CHAIN H 0.36137 0.74037 -0.56680 51.43546 0.14890 0.55421 0.81894 8.08719 0.92044 -0.38032 0.09009 -2.61524 } /disk3/pdb/pdb1arb.ent 1arb { ALL -0.00697 -0.85343 -0.52116 38.61292 -0.99609 -0.03989 0.07863 19.27838 -0.08795 0.51965 -0.84980 19.14232 } % Reading block file... Blocfile read: Length: 339 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 339 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 329 % The alignment: >1ahtlh (cluster A) sequence >1arb (cluster B) sequence >space >1ahtlh_dssp (cluster A) secondary structure from DSSP >1arb_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * E - A - D S C T G T L - R - P T L T F T E G K G K G S T L - E - D - K S T S E H R H E H L H L H E H S H YG -- 0 0.00000 0.00000 0.00000 IV -- 0 0.00000 0.00000 0.00000 IS -- 0 0.00000 0.00000 0.00000 G - VS BT 0 0.02400 2.55668 0.44000 EC ST 0 0.37300 1.49843 3.93000 GN -- 1 0.57400 1.63094 5.94000 SI EE 1 0.72000 1.07634 7.40000 DD EE 1 0.92000 0.97201 9.40000 V T V T C S P G E G G G D T AG -T ER -- 0 0.00400 2.95443 0.24000 IR TT 0 0.11300 2.62425 1.33000 GD TT 0 0.13600 2.47101 1.56000 MI SG 0 0.02700 2.44494 0.47000 SI -G 0 0.29300 0.62272 3.13000 PR TG 1 0.92700 0.82708 9.47000 WA TG 1 0.94000 0.68242 9.60000 QV EE 1 0.90200 0.72770 9.22000 VG EE 1 0.83000 1.17348 8.50000 MA EE 1 0.86200 1.04002 8.82000 LY EE 1 0.80800 1.26673 8.28000 FS EE 1 0.74300 1.28050 7.63000 RK EE 1 0.50700 1.77824 5.27000 KS TT 0 0.25500 2.13671 2.75000 S T P T QG TT 0 0.28000 2.01458 3.00000 ET EE 1 0.49200 1.83037 5.12000 LL EE 1 0.65600 1.41607 6.76000 LA EE 1 0.87300 0.69097 8.93000 CC EE 1 0.95000 0.67823 9.70000 GT EE 1 0.94100 0.79627 9.61000 AG EE 1 0.94800 0.62580 9.68000 SS EE 1 0.94300 0.78879 9.63000 LL EE 1 0.92700 0.78325 9.47000 IV -B 1 0.63700 1.05823 6.57000 N - N - T T A T N - D - SR S- DK S- 0 0.28400 1.88638 3.04000 RM S- 1 0.64600 1.20443 6.66000 WY EE 1 0.89100 0.93872 9.11000 VF EE 1 0.94100 0.53140 9.61000 LL EE 1 0.95000 0.58478 9.70000 TT EE 1 0.94700 0.67233 9.67000 AA -E 1 0.94200 0.72790 9.62000 AH GG 1 0.94700 0.59332 9.67000 HH GG 1 0.95000 0.59013 9.70000 CC GG 1 0.93100 0.82867 9.51000 LG TS 0 0.32400 1.04709 3.44000 LM E- YG E- P G P G W G D T KT ES NA EH FS -H 0 0.00300 2.50374 0.23000 TT -H 0 0.26500 1.09568 2.85000 EA GH 1 0.66400 1.50827 6.84000 NA GH 1 0.52200 1.73772 5.42000 DS GT 1 0.59600 1.60310 6.16000 LI E- 1 0.80700 1.29620 8.27000 LV EE 1 0.87200 1.11845 8.92000 VV EE 1 0.80600 1.39029 8.26000 RY EE 1 0.77300 1.51674 7.93000 IW EE 1 0.70700 1.62451 7.27000 GN SS 1 0.59700 1.80128 6.17000 KY -- 1 0.64700 1.70623 6.67000 HQ -- N - S S T S C - R - A - P T N T T S P G A G S G G G A S N - SG B- RD S- TG S- 0 0.14700 2.37951 1.67000 RS S- 1 0.45300 1.62977 4.73000 YM -- 1 0.62600 1.61153 6.46000 E - R T N T I T ES -- 0 0.00600 2.45136 0.26000 KQ E- 0 0.32300 1.96110 3.43000 IT EE 1 0.69800 1.44525 7.18000 SQ EE 1 0.77200 1.50198 7.92000 MS -E 1 0.72500 1.58646 7.45000 LG E- 1 0.50600 1.63792 5.26000 ES EE 0 0.34800 1.81242 3.68000 KT EE 1 0.61900 1.08358 6.39000 IV EE 1 0.59600 1.31286 6.16000 YK EE 0 0.41600 1.97274 4.36000 IA EE 0 0.40500 2.06977 4.25000 HT -E P T R T Y - N B W T R T E T NY TE LA -T 0 0.00300 2.39502 0.23000 DT BT 1 0.45400 1.59687 4.74000 RS TT 1 0.73700 1.21005 7.57000 DD -T 1 0.90100 0.51505 9.21000 IF -E 1 0.95600 0.44326 9.76000 AT EE 1 0.95000 0.62730 9.70000 LL EE 1 0.94300 0.76516 9.63000 ML EE 1 0.92300 0.72103 9.43000 KE EE 1 0.87500 1.01516 8.95000 LL EE 1 0.87800 1.11532 8.98000 KN SS 1 0.80500 1.06046 8.25000 KN SS 1 0.63700 1.58222 6.57000 PA -- 1 0.81900 1.20379 8.39000 VA -- 1 0.61600 0.99842 6.36000 AN -- 0 0.29100 1.86663 3.11000 FP -G SA -G DF SG YN S- 0 0.07400 1.96363 0.94000 IL -- 1 0.66200 1.12389 6.82000 HF -E 1 0.92900 0.83291 9.49000 PW -E 1 0.92400 0.94180 9.44000 VA -B 1 0.93300 0.78187 9.53000 CG B- 1 0.89400 0.64802 9.14000 LW -E 1 0.83800 1.19113 8.58000 PD -E 1 0.55900 1.14646 5.79000 D - R H E H TR H- 0 0.00000 2.72028 0.00000 AR H- 0 0.27800 1.89101 2.98000 AD HS 0 0.25500 2.27453 2.75000 SQ H- L H L - Q - AN T- GY T- YP -S 0 0.19000 1.15780 2.10000 KG E- 1 0.88100 1.15579 9.01000 GA EE 1 0.91000 0.90224 9.30000 RI EE 1 0.89800 1.05910 9.18000 VA EE 1 0.88700 1.02159 9.07000 TI EE 1 0.77000 1.42300 7.90000 GH EE 1 0.80900 1.34858 8.29000 WH S- 1 0.75600 1.47027 7.76000 GP -G 1 0.56200 1.05837 5.82000 NN -G L S K S E - T - G - Q - PV -G SA S- 0 0.07200 2.46322 0.92000 VE BS 0 0.41500 1.68454 4.35000 LK -- 1 0.77900 1.23396 7.99000 QR EE 1 0.86900 1.17517 8.89000 VI EE 1 0.89000 1.05281 9.10000 VS EE 1 0.87800 1.01819 8.98000 NN EE 1 0.88200 0.47883 9.02000 S E LT E- 0 0.22800 2.24322 2.48000 PS ES 1 0.48700 1.66461 5.07000 IP B- 0 0.39300 1.87294 4.13000 VT -- 0 0.39000 1.94426 4.10000 ES -E 1 0.55800 1.94497 5.78000 RF HE PV HE V H C H K H D T SA T- TW -T RG ST IG SS 0 0.03900 2.35897 0.59000 RG -S 0 0.22800 2.01448 2.48000 IA -S 0 0.21000 2.14441 2.30000 TG -- 1 0.53500 1.66737 5.55000 DT TS 1 0.78100 1.11202 8.01000 NT TS 1 0.85900 1.15058 8.79000 MH EE 1 0.88600 0.70170 9.06000 FL EE 1 0.85200 1.10758 8.72000 CN EE 1 0.89200 0.70855 9.12000 AV EE 1 0.85800 0.94368 8.78000 GQ -E YW -- K - P T D T EQ S- GP ST KS -T RG -S 0 0.19700 2.17698 2.17000 GG -- 1 0.43100 1.99024 4.51000 DV B- 1 0.64200 1.44926 6.62000 AT -- 1 0.86500 1.04436 8.85000 CE -- 1 0.86700 1.12602 8.87000 EP TT 1 0.91200 0.73655 9.32000 GG TT 1 0.92700 0.90216 9.47000 DS T- 1 0.94700 0.62941 9.67000 SS TT 1 0.94700 0.67819 9.67000 GG TT 1 0.95100 0.54191 9.71000 GS -- 1 0.93900 0.62960 9.59000 PP EE 1 0.91700 0.92936 9.37000 FI EE 1 0.92900 0.88995 9.49000 VY EE 1 0.87200 1.02328 8.92000 MS E- 1 0.59800 1.44818 6.18000 K E S - P T F T N T NP -T 0 0.00000 2.96805 0.00000 RE -T 0 0.10700 2.27095 1.27000 WK ES 1 0.51100 1.36175 5.31000 YR E- 1 0.86700 0.60915 8.87000 QV EE 1 0.92800 0.81923 9.48000 ML EE 1 0.88500 1.04631 9.05000 GG EE 1 0.78600 1.33983 8.06000 IQ EE 1 0.88400 0.78701 9.04000 VL EE 1 0.92200 0.92169 9.42000 SH EE 1 0.91100 0.79094 9.31000 WG EE 1 0.83800 1.25017 8.58000 GG -- 1 0.77600 0.98966 7.96000 EP SS GS S- CS S- C T S T A - DT S- RG -G DT TG GN TG KR -S 0 0.09200 2.29535 1.12000 YS -E 1 0.48500 1.59629 5.05000 GD EE 1 0.80200 0.79497 8.22000 FQ EE 1 0.94000 0.78947 9.60000 YY EE 1 0.91000 0.79258 9.30000 TG EE 1 0.88500 0.93957 9.05000 HR EE 1 0.90800 0.94974 9.28000 VV TH 1 0.82500 1.10908 8.45000 FF GH 1 0.63900 1.60850 6.59000 RT GH 1 0.63100 1.65475 6.51000 LS GH 1 0.69100 1.30310 7.11000 KW HH 1 0.59200 1.48665 6.12000 T H G T G T G S A S A G A G KS HG WR H- 0 0.07800 1.40742 0.98000 IL HS 1 0.82000 0.94212 8.40000 QS HH 1 0.73400 1.45188 7.54000 KD HH 1 0.63200 1.33792 6.52000 VW HH 0 0.27700 2.05193 2.97000 IL HH 0 0.20200 2.34692 2.22000 DD H- QP HT FA HT S - T - G - A - Q S F E I E D - G - L E D E *