% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1add.ent 1add { ALL -0.37422 0.38141 0.84523 3.86966 -0.90701 -0.34022 -0.24804 104.48077 0.19301 -0.85947 0.47327 39.97401 } /disk3/pdb/pdb1pta.ent 1pta { ALL 0.50102 0.45903 0.73364 -10.13176 -0.83645 0.03910 0.54672 102.33849 0.22224 -0.88759 0.40346 80.88860 } % Reading block file... Blocfile read: Length: 428 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 428 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 415 % The alignment: >1add (cluster A) sequence >1pta (cluster B) sequence >space >1add_dssp (cluster A) secondary structure from DSSP >1pta_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * R - I E N E T E V T R T G E P E TI -E 0 0.00000 0.00000 0.00000 PT -- 0 0.00000 0.00000 0.00000 AI SH 0 0.00000 0.00000 0.00000 FS -H 0 0.00000 0.00000 0.00000 NE -H 0 0.00000 0.00000 0.00000 KA SH 0 0.00000 0.00000 0.00000 PG -- 0 0.00000 2.25303 0.14000 KF ES 1 0.47300 1.31455 4.93000 VT EE 1 0.84900 0.96442 8.69000 EL EE 1 0.85900 1.24069 8.79000 LT EE 1 0.80400 1.41998 8.24000 HH EE 1 0.83600 1.29282 8.56000 VE EE 1 0.80100 1.32177 8.21000 HH E- 1 0.59300 1.70101 6.13000 LI G- DC GS GG G- A S I - K - P H E H T H I H L H Y H F H G H K H K H R H G T I - A - L - P S A - D S T S V H E H E H L H R H N H I H I H G S M - D S K S P - L - S - L H P H G H F H L T A T K G F G D G Y G Y T M H PS HT VS HT IA HT AG TT 0 0.26900 1.45844 2.89000 GF TH 1 0.54600 1.85267 5.66000 CL -H 0 0.32700 1.91045 3.47000 RR HH EA HH AW H- IP HH E H F H F H G - S - R H KK HH RA HH IL HH AA HH YE HH EK HH 0 0.14700 2.34289 1.67000 FA HH 0 0.31700 2.04709 3.37000 VV HH 0 0.15500 2.46648 1.75000 ER HH 0 0.16100 2.37511 1.81000 MG HH 0 0.42800 1.68504 4.48000 KL HH 0 0.42100 1.86813 4.41000 AR HH 0 0.30800 2.10925 3.28000 KR HH 0 0.42600 1.73034 4.46000 A H R H A H EA TH 0 0.38300 2.12188 4.03000 GG TT 1 0.61000 1.60996 6.30000 VV E- 1 0.76900 1.35454 7.89000 VR E- 1 0.83500 1.21008 8.55000 YT EE 1 0.82400 1.39593 8.44000 VI EE 1 0.84700 1.30374 8.67000 EV EE 1 0.86800 1.10477 8.88000 VD EE 1 0.90800 0.66828 9.28000 RV E- 1 0.89100 0.98500 9.11000 YS E- 1 0.73700 1.21862 7.57000 ST -- 1 0.45900 1.88212 4.79000 PF SG 1 0.67200 1.39306 6.92000 HD GG 1 0.70900 1.37128 7.29000 LI GG 1 0.63000 1.76683 6.50000 LG GT A - N S S S K S V - D S P S M - P G W G N G Q - T - E - G - D S V - T - P H D H D H V H V H D H LR H- VD H- 0 0.15700 1.36379 1.77000 NV HH 1 0.80000 1.35292 8.20000 QS HH 1 0.86800 1.20424 8.88000 GL HH 1 0.82500 1.38436 8.45000 LL HH 1 0.83000 1.39536 8.50000 QA HH 1 0.82600 1.39941 8.46000 EE HH 1 0.78700 1.50555 8.07000 GV HH 1 0.73300 1.62669 7.53000 ES HH 1 0.70900 1.68002 7.29000 QR HH 1 0.72700 1.64438 7.47000 AA HH 1 0.73800 1.62683 7.58000 FA HH 1 0.71200 1.64246 7.32000 GD -T 1 0.72900 1.59881 7.49000 IV -- 1 0.76500 1.54717 7.85000 KH EE 1 0.79700 1.42095 8.17000 VI EE 1 0.86400 1.12792 8.84000 RV EE 1 0.87500 1.03424 8.95000 SA E- 1 0.83600 1.22502 8.56000 IA EE 1 0.67900 1.44250 6.99000 LT EE 1 0.48200 1.88277 5.02000 CG EE 0 0.33600 2.14169 3.56000 CL EE 1 0.57000 1.63449 5.90000 MW E- 1 0.56800 1.71037 5.88000 RF TS 1 0.54100 1.74781 5.61000 HD TS 1 0.51200 1.90010 5.32000 QP -- 0 0.23700 2.01066 2.57000 PP T- 0 0.00100 2.75896 0.21000 SL TH 0 0.16000 2.07884 1.80000 WS TH 0 0.13600 2.44723 1.56000 SM HH 0 0.23000 2.27549 2.50000 R H L T R - S - V H LE HH 0 0.02900 2.90743 0.49000 EE HH 0 0.06900 2.77913 0.89000 VL HH 0 0.12500 2.60653 1.45000 LT HH 0 0.29500 2.27508 3.15000 EQ HH 0 0.36700 2.18827 3.87000 LF HH 0 0.39400 2.06992 4.14000 CF HH 1 0.62900 1.63521 6.49000 KL HH 1 0.79400 1.39829 8.14000 KR HH 1 0.83700 1.34292 8.57000 YE TH 1 0.78400 1.37032 8.04000 NI BH 0 0.26900 0.76752 2.89000 QQ TH Y T G - I B E T D T T T G T KI TB TR T- 0 0.22100 1.91859 2.41000 VA E- 1 0.60500 1.14298 6.25000 VG E- 1 0.74100 1.48428 7.61000 AI EE 1 0.72800 1.60072 7.48000 MI EE 1 0.69200 1.56810 7.12000 DK EE 1 0.69300 1.46907 7.13000 LV EE 1 0.64300 1.61170 6.63000 AA E- 1 0.44000 1.52538 4.60000 GT S- DT -- E T T T I S E T G T SG GS SK GS LA G- 0 0.29200 1.92459 3.12000 FT -- 1 0.72400 1.29126 7.44000 PP HH 1 0.80000 1.45037 8.20000 GF HH 1 0.81100 1.46145 8.31000 HQ HH 1 0.75200 1.53845 7.72000 VE HH 1 0.83900 1.16375 8.59000 EL HH 1 0.84300 1.19060 8.63000 AV HH 1 0.76600 1.51123 7.86000 YL HH 1 0.77000 1.50810 7.90000 EK HH 1 0.84500 1.26291 8.65000 GA HH 1 0.81500 1.41631 8.35000 AA HH 1 0.78600 1.51808 8.06000 VA HH 1 0.78300 1.50556 8.03000 KR HH 1 0.74900 1.54292 7.69000 A H S H L H A H NT HH GG T- 0 0.23900 2.39119 2.59000 IV -- 0 0.22800 2.35390 2.48000 HP E- 1 0.43600 1.81561 4.56000 RV EE 1 0.75400 1.24437 7.74000 TT EE 1 0.88000 1.09319 9.00000 VT EE 1 0.89700 0.88618 9.17000 HH EE 1 0.83800 1.11988 8.58000 A E GT S- 0 0.11800 2.32229 1.38000 EA S- 0 0.00600 2.90849 0.26000 VA SS 0 0.11300 2.62818 1.33000 GS SS 0 0.20300 2.36161 2.23000 SQ -T 1 0.49300 1.76348 5.13000 P H ER HT 1 0.46800 1.34920 4.88000 VD HH 1 0.87300 0.88225 8.93000 VG HH 1 0.85400 1.14821 8.74000 RE HH 1 0.88600 0.88543 9.06000 EQ HH 1 0.83500 1.22586 8.55000 AQ HH 1 0.79700 1.41368 8.17000 VA HH 1 0.85800 1.27532 8.78000 DA HH 1 0.80700 1.22329 8.27000 II TH 1 0.50300 1.38709 5.23000 LF TH E H S H E H G T L - S - P G KS -G TR -G 0 0.00000 2.61403 0.08000 EV SE 0 0.17600 0.87108 1.96000 RC EE 1 0.89600 0.91736 9.16000 VI EE 1 0.84900 1.21837 8.69000 GG EE 1 0.75900 1.26818 7.79000 HH EE 0 0.19800 1.71477 2.18000 S S GD -S 0 0.00000 2.80037 0.20000 YD GS 0 0.26700 2.19765 2.87000 HT G- 0 0.34000 2.26759 3.60000 TD GS 0 0.24500 2.28682 2.65000 ID G- 0 0.32600 1.98420 3.46000 EL GH 0 0.41000 1.95112 4.30000 D S E H AS HH 0 0.16300 2.44877 1.83000 LY HH 0 0.27700 2.17749 2.97000 YL HH 1 0.43200 1.95764 4.52000 NT HH 0 0.39200 2.03001 4.12000 RA HH 0 0.34800 1.94656 3.68000 LL HH 1 0.56200 1.61058 5.82000 LA HH 1 0.61900 1.65254 6.39000 KA HH 1 0.60100 1.68053 6.21000 ER TT 1 0.58000 1.83762 6.00000 NG TT 1 0.64300 1.74375 6.63000 MY -- 1 0.78200 1.37536 8.02000 HL EE 1 0.84100 1.27242 8.61000 FI EE 1 0.81300 1.36583 8.33000 EG EE 1 0.70900 1.58272 7.29000 VL EE 0 0.41800 1.60797 4.38000 CD -- PH H- WI H- SP H- SH H- YS H- LA H- TI T- A - L - L S G - GI S- AR S- WS S- DW -H PQ TH KT TH TR SH TA -H HL -H 0 0.09300 1.96033 1.13000 AL HH 1 0.59400 1.61677 6.14000 VI HH 1 0.79600 1.22640 8.16000 VK HH 1 0.77600 1.36855 7.96000 RA HH 1 0.82400 1.19778 8.44000 FL HH 1 0.88800 1.14653 9.08000 KI HH 1 0.87100 1.18958 8.91000 ND HH 1 0.84600 0.92639 8.66000 DQ TT 1 0.63900 1.51074 6.59000 G T Y T KM TG AK -G 0 0.30200 2.05423 3.22000 NQ EG 1 0.62100 1.19266 6.41000 YI EE 1 0.80200 0.96714 8.22000 SL EE 1 0.64800 1.62895 6.68000 LV EE 1 0.61300 1.75273 6.33000 NS -- 1 0.72600 1.26132 7.46000 TN -H 1 0.71600 1.25538 7.36000 DD BH W H L H F H G S F S S - S H Y H V H T H N T I T M S D S V - DM -S PD HS LR HS 0 0.00000 2.75486 0.07000 IV H- 0 0.13600 2.26994 1.56000 FN H- 0 0.29600 2.21390 3.16000 KP TT 0 0.34900 2.24303 3.69000 SD -T 0 0.39400 2.10638 4.14000 TG -G 1 0.59100 1.70425 6.11000 LM HG 1 0.48400 1.96434 5.04000 DA HG 1 0.49100 1.94437 5.11000 F H I H P H L H TR HH 1 0.47800 2.02141 4.98000 DV HH 1 0.55000 1.88808 5.70000 YI HH 1 0.58600 1.73261 6.06000 QP HH 0 0.41600 2.09016 4.36000 MF HH 0 0.38000 2.16305 4.00000 TL HH 1 0.57300 1.85081 5.93000 KR HH 1 0.51200 1.99789 5.32000 K H DE TH 0 0.04500 2.62202 0.65000 MK TT 0 0.31500 2.13415 3.35000 GG TT 1 0.45000 2.00855 4.70000 FV -- 1 0.54900 1.82620 5.69000 TP -- 1 0.51200 1.88883 5.32000 EQ HH 1 0.67300 1.39461 6.93000 EE HH 1 0.70600 1.42360 7.26000 ET HH 1 0.72700 1.42384 7.47000 FL HH 1 0.73800 1.22747 7.58000 KA HH 1 0.80800 0.97735 8.28000 RG HH 1 0.81600 1.24699 8.36000 LI HH 1 0.84800 1.06410 8.68000 T H NV HT 1 0.48600 1.59335 5.06000 IT HH 1 0.81400 1.08965 8.34000 NN HH 1 0.77700 1.27787 7.97000 AP HH 1 0.73500 1.39651 7.55000 AA HH 1 0.83400 1.18894 8.54000 KR HH 1 0.90400 0.98169 9.24000 S T SF SH 0 0.27000 1.72655 2.90000 FL -H 0 0.39800 1.55137 4.18000 LS -S 0 0.42100 1.91354 4.41000 PP -- 0 0.42400 1.86197 4.44000 ET H- 0 0.00000 3.12626 0.00000 E H E H K H K H E H L H L H E H R H L H Y H R H E H Y T *