% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb4dfr.ent 4dfra { CHAIN A -0.56820 -0.82289 -0.00259 77.42374 -0.75066 0.51958 -0.40813 -0.67774 0.33722 -0.22994 -0.91292 23.13206 } /disk3/pdb/pdb3dfr.ent 3dfr { ALL 0.75455 -0.33170 -0.56625 41.53889 0.65509 0.43187 0.61996 -21.16188 0.03890 -0.83874 0.54316 9.50155 } % Reading block file... Blocfile read: Length: 165 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 165 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 163 % The alignment: >4dfra (cluster A) sequence >3dfr (cluster B) sequence >space >4dfra_dssp (cluster A) secondary structure from DSSP >3dfr_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * M - IT E- 1 0.92100 0.98928 9.41000 SA EE 1 0.93300 0.85656 9.53000 LF EE 1 0.94300 0.73642 9.63000 IL EE 1 0.95300 0.42672 9.73000 AW EE 1 0.94900 0.59046 9.69000 AA EE 1 0.93600 0.84174 9.56000 LQ EE 1 0.91900 0.75196 9.39000 AN -- 1 0.83600 1.17014 8.56000 VR GT 1 0.79100 1.37422 8.11000 DN GT 1 0.87900 1.05603 8.99000 RG G- 1 0.91700 0.76403 9.37000 VL BE 1 0.91400 0.93938 9.34000 II -E 1 0.86100 1.09592 8.81000 GG -E 1 0.50300 1.15368 5.23000 MK SB 0 0.19600 2.24780 2.16000 ED ST 1 0.45300 2.02468 4.73000 NG ST 1 0.60300 1.75177 6.23000 AH -B 1 0.72600 1.49282 7.46000 ML -- 1 0.65600 1.44186 6.76000 PP SS 1 0.46500 1.83063 4.85000 WW -S 1 0.72300 1.39322 7.43000 NH -- 1 0.76600 1.47480 7.86000 LL -- 1 0.85900 1.15308 8.79000 PP HH 1 0.89700 1.08594 9.17000 AD HH 1 0.91000 0.97330 9.30000 DD HH 1 0.93500 0.67444 9.55000 LL HH 1 0.90900 0.95018 9.29000 AH HH 1 0.88700 1.11712 9.07000 WY HH 1 0.91800 0.94608 9.38000 FF HH 1 0.93300 0.85456 9.53000 KR HH 1 0.92800 0.96786 9.48000 RA HH 1 0.93200 0.92287 9.52000 NQ HT 1 0.91100 1.04331 9.31000 TT HT 1 0.93300 0.85852 9.53000 LV TT 1 0.94100 0.78519 9.61000 DG TT 1 0.94100 0.69919 9.61000 KK SS 1 0.93900 0.71604 9.59000 PI EE 1 0.93100 0.86274 9.51000 VM EE 1 0.94100 0.77581 9.61000 IV EE 1 0.95300 0.58702 9.73000 MV EE 1 0.95000 0.64377 9.70000 GG EE 1 0.93200 0.59693 9.52000 RR HH 1 0.89800 1.05159 9.18000 HR HH 1 0.88400 1.06568 9.04000 TT HH 1 0.89600 0.81475 9.16000 WY HH 1 0.92000 0.79693 9.40000 EE HH 1 0.90500 1.01130 9.25000 SS HH 1 0.91200 0.90824 9.32000 IF HS 1 0.62500 0.68641 6.45000 GP -S 0 0.36500 1.93454 3.85000 K S RR SS 1 0.51400 1.07998 5.34000 PP -S 1 0.87000 0.81356 8.90000 LL -- 1 0.87000 1.07326 8.90000 PP TT 1 0.92500 0.88280 9.45000 GE TT 1 0.91000 0.89223 9.30000 RR SS 1 0.92100 0.78891 9.41000 KT EE 1 0.93700 0.81577 9.57000 NN EE 1 0.92500 0.91637 9.45000 IV EE 1 0.94200 0.70459 9.62000 IV EE 1 0.94800 0.66500 9.68000 LL EE 1 0.93300 0.56840 9.53000 ST -- 1 0.89700 0.99582 9.17000 SH SS 1 0.91100 0.80468 9.31000 Q - QE ST 0 0.20100 2.32103 2.21000 PD -T 0 0.30000 1.84425 3.20000 GY -- 1 0.51600 1.40187 5.36000 TQ -- 1 0.68300 1.45737 7.03000 DA -- 1 0.74900 1.41803 7.69000 DQ TT 1 0.75200 1.47109 7.72000 RG TT 1 0.84100 1.16107 8.61000 VA SS 1 0.89700 1.03209 9.17000 TV EE 1 0.89300 1.07669 9.13000 WV EE 1 0.89800 0.99344 9.18000 VV EE 1 0.92500 0.80137 9.45000 KH SS 1 0.93000 0.79149 9.50000 SD SS 1 0.94400 0.48083 9.64000 VV HH 1 0.94200 0.67391 9.62000 DA HH 1 0.90900 0.93570 9.29000 EA HH 1 0.89600 0.74413 9.16000 AV HH 1 0.84900 1.16320 8.69000 IF HH 1 0.84500 1.26190 8.65000 AA HH 1 0.84700 1.27664 8.67000 AY HH 1 0.77900 1.44046 7.99000 A H CK HH 0 0.01000 2.49163 0.30000 GQ -H 0 0.27600 1.64814 2.96000 DH S- 1 0.56300 1.81116 5.83000 VL -- 1 0.47100 1.64078 4.91000 D S PQ SS 0 0.06100 2.24213 0.81000 EE -- 1 0.50400 1.28114 5.24000 IL EE 1 0.88000 0.39391 9.00000 MV EE 1 0.94200 0.74667 9.62000 VI EE 1 0.94500 0.77916 9.65000 IA E- 1 0.94800 0.71653 9.68000 GG E- 1 0.95000 0.65506 9.70000 GG -- 1 0.95100 0.61462 9.71000 GA HH 1 0.94700 0.43764 9.67000 RQ HH 1 0.92400 0.82945 9.44000 VI HH 1 0.94400 0.49377 9.64000 YF HH 1 0.93500 0.73811 9.55000 ET HH 1 0.90500 0.99269 9.25000 QA HH 1 0.87700 1.15109 8.97000 FF HT 1 0.85900 0.95920 8.79000 LK GG 1 0.66900 1.42478 6.89000 PD GG 1 0.73700 1.17666 7.57000 KD GG 1 0.89400 0.69866 9.14000 AV -- 1 0.92900 0.72400 9.49000 QD -- 1 0.94400 0.64985 9.64000 KT EE 1 0.95200 0.62750 9.72000 LL EE 1 0.94700 0.71106 9.67000 YL EE 1 0.95300 0.49138 9.73000 LV EE 1 0.95200 0.64771 9.72000 TT EE 1 0.95100 0.66479 9.71000 HR EE 1 0.94200 0.70081 9.62000 IL EE 1 0.83500 0.97168 8.55000 DA -S 1 0.68700 1.49830 7.07000 AG -S 1 0.60000 1.67544 6.20000 ES -- 1 0.77500 1.18754 7.95000 VF -- 1 0.79400 1.35571 8.14000 EE -- 1 0.70700 1.53858 7.27000 GG -- 1 0.64600 1.75762 6.66000 DD SS 1 0.64700 1.75671 6.67000 TT -E 1 0.77100 1.40645 7.91000 HK BE 1 0.87000 1.13296 8.90000 FM -- 1 0.91900 0.92538 9.39000 PI -- 1 0.87400 1.12523 8.94000 DP -- 1 0.86400 1.19548 8.84000 YL -- 1 0.84100 1.27096 8.61000 EN -- 1 0.71600 1.53249 7.36000 PW GG 1 0.82000 1.23569 8.40000 DD GG 1 0.87200 1.08150 8.92000 DD GG 1 0.91800 0.62238 9.38000 WF EE 1 0.94400 0.29216 9.64000 ET EE 1 0.93300 0.78935 9.53000 SK EE 1 0.93900 0.72693 9.59000 VV EE 1 0.92400 0.87951 9.44000 FS EE 1 0.93200 0.77557 9.52000 SS EE 1 0.91900 0.76123 9.39000 ER EE 1 0.88900 1.09651 9.09000 FT EE 1 0.90400 1.04186 9.24000 HV EE 1 0.86900 1.16630 8.89000 DE -- 1 0.91800 0.86655 9.38000 AD -- 1 0.66200 0.80854 6.82000 DT -S A S QN SS NP -G SA SG 0 0.00000 2.63816 0.06000 HL SG 0 0.20700 1.02751 2.27000 ST -- 1 0.91800 0.78045 9.38000 YH EE 1 0.94100 0.71302 9.61000 CT EE 1 0.93100 0.85273 9.51000 FY EE 1 0.94900 0.59683 9.69000 KE EE 1 0.95300 0.64209 9.73000 IV EE 1 0.95200 0.63448 9.72000 LW EE 1 0.95400 0.58581 9.74000 EQ EE 1 0.94700 0.46662 9.67000 RK EE 1 0.93000 0.83713 9.50000 K - 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