% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb3gct.ent 3gcta { CHAIN A -0.11022 0.07292 -0.99125 78.37282 0.08328 0.99446 0.06396 13.24686 0.99037 -0.07553 -0.11560 -6.23629 } /disk3/pdb/pdb1mct.ent 1mcta { CHAIN A -0.39944 0.83526 -0.37780 18.18229 -0.10308 0.36851 0.92384 2.10735 0.91093 0.40796 -0.06108 11.08525 } % Reading block file... Blocfile read: Length: 242 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 242 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 242 % The alignment: >3gcta (cluster A) sequence >1mcta (cluster B) sequence >space >3gcta_dssp (cluster A) secondary structure from DSSP >1mcta_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * C - G - V - P - A S I S Q - P - V - L - II -- 1 0.95600 0.55597 9.76000 VV BB 1 0.94800 0.54084 9.68000 NG TS 1 0.93400 0.77137 9.54000 GG -- 1 0.94200 0.71355 9.62000 EY EE 1 0.95300 0.46954 9.73000 ET EE 1 0.95300 0.53345 9.73000 AC -- 1 0.94300 0.58897 9.63000 VA -- 1 0.86800 0.75972 8.88000 PA TT 1 0.79600 1.20531 8.16000 GN TT 1 0.64900 1.53955 6.69000 SS S- 1 0.79700 0.92303 8.17000 WI S- 1 0.93900 0.72157 9.59000 PP TT 1 0.94600 0.65309 9.66000 WY TT 1 0.95000 0.62458 9.70000 QQ EE 1 0.95300 0.47726 9.73000 VV EE 1 0.95600 0.45942 9.76000 SS EE 1 0.95500 0.53323 9.75000 LL EE 1 0.95100 0.61397 9.71000 QN EE 1 0.93400 0.77544 9.54000 D - K T TS TS GG -S 0 0.14900 1.94454 1.69000 FS -S 1 0.65000 0.81856 6.70000 HH EE 1 0.93800 0.74717 9.58000 FF EE 1 0.95200 0.34238 9.72000 CC EE 1 0.95700 0.45417 9.77000 GG EE 1 0.95500 0.49984 9.75000 GG EE 1 0.95600 0.45712 9.76000 SS EE 1 0.95600 0.51310 9.76000 LL EE 1 0.95600 0.50539 9.76000 II EE 1 0.95000 0.52319 9.70000 NN EE 1 0.94400 0.69396 9.64000 ES TT 1 0.94700 0.68409 9.67000 NQ TT 1 0.95300 0.45644 9.73000 WW EE 1 0.95500 0.52624 9.75000 VV EE 1 0.95800 0.40932 9.78000 VV EE 1 0.95800 0.34305 9.78000 TS EE 1 0.95700 0.47805 9.77000 AA -- 1 0.95800 0.38529 9.78000 AA GG 1 0.95500 0.36016 9.75000 HH GG 1 0.94400 0.66698 9.64000 CC GG 1 0.89200 0.78012 9.12000 GY -- 1 0.66900 1.29945 6.89000 VK -- 1 0.54700 1.70855 5.67000 T - TS TS 0 0.22600 2.14574 2.46000 SR TS 1 0.54300 1.45091 5.63000 DI S- 1 0.76300 1.23607 7.83000 VQ EE 1 0.87800 0.69605 8.98000 VV EE 1 0.95400 0.40699 9.74000 VR EE 1 0.95800 0.31725 9.78000 AL EE 1 0.95800 0.37388 9.78000 GG SS 1 0.95400 0.31031 9.74000 EE -- 1 0.94000 0.68741 9.60000 FH SS 1 0.95100 0.26092 9.71000 DN BB 1 0.92500 0.58689 9.45000 QI TT 1 0.85100 1.08035 8.71000 GD TT 1 0.79200 1.39215 8.12000 SV -S 1 0.76500 1.20178 7.85000 SL S- 1 0.66100 1.53899 6.81000 SE S- 1 0.47200 1.69650 4.92000 EG SS 0 0.34600 1.71742 3.66000 KN -- 1 0.52500 1.47040 5.45000 IE -- 1 0.84800 0.61657 8.68000 QQ EE 1 0.95000 0.61522 9.70000 KF EE 1 0.95000 0.45471 9.70000 LI EE 1 0.94100 0.74019 9.61000 KN EE 1 0.93500 0.88691 9.55000 IA EE 1 0.93800 0.86036 9.58000 AA EE 1 0.92300 0.73062 9.43000 KK EE 1 0.89500 0.96153 9.15000 VI EE 1 0.92900 0.67634 9.49000 FI EE 1 0.92100 0.82923 9.41000 KT EE 1 0.93200 0.77392 9.52000 NH -- 1 0.92400 0.87245 9.44000 SP TT 1 0.90600 0.50006 9.26000 KN TT 1 0.86000 1.13485 8.80000 YF -- 1 0.91700 0.92708 9.37000 NN B- 1 0.89900 1.09663 9.19000 SG TT 1 0.89500 1.09825 9.15000 LN TT 1 0.84800 1.25961 8.68000 TT TT 1 0.89000 0.99544 9.10000 IL T- 1 0.93100 0.46748 9.51000 ND BT 1 0.94200 0.70774 9.62000 NN TT 1 0.94200 0.76514 9.62000 DD -- 1 0.95000 0.59689 9.70000 II -- 1 0.95500 0.49233 9.75000 TM EE 1 0.95600 0.48827 9.76000 LL EE 1 0.95800 0.25582 9.78000 LI EE 1 0.95400 0.37312 9.74000 KK EE 1 0.94700 0.67456 9.67000 LL EE 1 0.94700 0.68743 9.67000 SS SS 1 0.92500 0.67594 9.45000 TS SS 1 0.87800 1.11841 8.98000 AP -- 1 0.92000 0.91638 9.40000 AA -- 1 0.93500 0.77908 9.55000 ST -- 1 0.94800 0.64386 9.68000 FL -- 1 0.95000 0.59224 9.70000 SN -S 1 0.94500 0.71788 9.65000 QS SS 1 0.94600 0.64989 9.66000 TR SS 1 0.93100 0.80775 9.51000 VV -- 1 0.94100 0.50341 9.61000 SA -- 1 0.92900 0.82255 9.49000 AT -- 1 0.94800 0.57831 9.68000 VV -- 1 0.95300 0.60284 9.73000 CS BB 1 0.95300 0.57964 9.73000 LL -- 1 0.94000 0.51682 9.60000 PP -- 1 0.75300 0.97244 7.73000 S - A T SR TS 0 0.01800 2.52739 0.38000 DS -S 0 0.21300 0.92475 2.33000 DC -- 0 0.37900 1.87194 3.99000 FA -- 1 0.72600 1.12867 7.46000 AA -- 1 0.87400 1.10801 8.94000 AA TT 1 0.91300 0.91040 9.33000 GG TT 1 0.88200 1.17266 9.02000 TT -- 1 0.87800 1.21159 8.98000 TE EE 1 0.90500 1.03943 9.25000 CC EE 1 0.92300 0.89822 9.43000 VL EE 1 0.89900 0.98714 9.19000 TI EE 1 0.93000 0.55971 9.50000 TS EE 1 0.95200 0.63280 9.72000 GG EE 1 0.95100 0.66199 9.71000 WW SS 1 0.95100 0.58424 9.71000 GG SS 1 0.94000 0.77608 9.60000 LN -- 1 0.94600 0.66789 9.66000 TT S- 1 0.95000 0.58631 9.70000 K - S S S S G S RS -- YS -- 0 0.00000 2.73646 0.08000 TY -- 0 0.24400 1.45351 2.64000 PP -- 1 0.86300 0.89773 8.83000 DS SS 1 0.94300 0.73218 9.63000 RL BB 1 0.95300 0.49466 9.73000 LL -- 1 0.95400 0.58405 9.74000 QQ EE 1 0.95400 0.59412 9.74000 QC EE 1 0.95500 0.51716 9.75000 AL EE 1 0.95200 0.58696 9.72000 SK EE 1 0.95000 0.66524 9.70000 LA EE 1 0.94300 0.68658 9.63000 PP EE 1 0.91700 0.96372 9.37000 LV BB 1 0.91500 0.75699 9.35000 LL -- 1 0.88300 0.84689 9.03000 SS -- 1 0.81800 1.23213 8.38000 NN HH 1 0.77800 1.33337 7.98000 TS HH 1 0.79900 1.18944 8.19000 NS HH 1 0.80500 1.13824 8.25000 CC HH 1 0.88000 0.79075 9.00000 KK HH 1 0.88200 1.09662 9.02000 KS HH 1 0.89200 1.06158 9.12000 YS HH 1 0.91400 0.93365 9.34000 WY HS 1 0.93100 0.57234 9.51000 GP GT 1 0.91700 0.94211 9.37000 TG GT 1 0.90600 1.01913 9.26000 KQ GT 1 0.93300 0.66557 9.53000 II -- 1 0.95000 0.63355 9.70000 KT -- 1 0.95300 0.59862 9.73000 DG TT 1 0.95000 0.54765 9.70000 AN TT 1 0.94600 0.71695 9.66000 MM EE 1 0.94800 0.72725 9.68000 II EE 1 0.94200 0.80823 9.62000 CC EE 1 0.94400 0.78674 9.64000 AV EE 1 0.94500 0.77031 9.65000 GG ES F - L T AQ -T SG S- 0 0.16100 2.26536 1.81000 GG SS 0 0.41400 1.79342 4.34000 VK -- 1 0.72500 0.85960 7.45000 SD BB 1 0.94100 0.74566 9.61000 SS -- 1 0.94400 0.66244 9.64000 CC -- 1 0.95300 0.37797 9.73000 MQ TT 1 0.95600 0.44159 9.76000 GG TT 1 0.95100 0.62645 9.71000 DD -- 1 0.95600 0.51780 9.76000 SS TT 1 0.95500 0.53914 9.75000 GG TT 1 0.95600 0.30626 9.76000 GG -- 1 0.95300 0.54635 9.73000 PP EE 1 0.95200 0.58575 9.72000 LV EE 1 0.94800 0.70697 9.68000 VV EE 1 0.94600 0.71160 9.66000 CC EE 1 0.94300 0.61241 9.63000 K E K E N T G T AN ET 0 0.00000 2.37627 0.07000 WG ET 0 0.33100 0.99763 3.51000 TQ EE 1 0.93600 0.63755 9.56000 LL EE 1 0.95400 0.44763 9.74000 VQ EE 1 0.95700 0.43590 9.77000 GG EE 1 0.95700 0.49257 9.77000 II EE 1 0.95400 0.60599 9.74000 VV EE 1 0.95400 0.57774 9.74000 SS EE 1 0.95000 0.66887 9.70000 WW EE 1 0.94200 0.64533 9.62000 GG -E 1 0.88600 0.85184 9.06000 SY -S 1 0.78900 1.33364 8.09000 S T TG TS 1 0.58700 1.54535 6.07000 CC -S 1 0.67800 0.67880 6.98000 SA -S 1 0.57000 1.56543 5.90000 TQ TB 0 0.40500 2.02642 4.25000 SK TT 1 0.60100 1.58792 6.21000 N T TK SB 1 0.50700 1.44545 5.27000 PP E- 1 0.77800 0.98754 7.98000 GG EE 1 0.93700 0.63588 9.57000 VV EE 1 0.95000 0.58854 9.70000 YY EE 1 0.95400 0.59192 9.74000 AT EE 1 0.95700 0.43501 9.77000 RK EE 1 0.95200 0.38368 9.72000 VV GG 1 0.93300 0.68050 9.53000 TC GG 1 0.91400 0.88281 9.34000 AN GG 1 0.91700 0.89702 9.37000 LY TS 1 0.90800 1.05552 9.28000 VV HH 1 0.90100 1.07895 9.21000 NN HH 1 0.87600 1.14579 8.96000 WW HH 1 0.91900 0.84596 9.39000 VI HH 1 0.94000 0.56984 9.60000 QQ HH 1 0.92600 0.89888 9.46000 QQ HH 1 0.92400 0.85254 9.44000 TT HH 1 0.93400 0.34100 9.54000 LI HH 1 0.93400 0.78894 9.54000 AA HH 1 0.93100 0.87401 9.51000 AA HH 1 0.92700 0.91069 9.47000 *