% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb2por.ent 2por { ALL -0.27769 -0.95849 -0.06478 -0.71789 0.95248 -0.28348 0.11130 34.12648 -0.12501 -0.03079 0.99167 59.20732 } /disk3/pdb/pdb1prn.ent 1prn { ALL -0.22491 -0.96595 -0.12786 59.25111 0.96669 -0.23766 0.09490 47.75950 -0.12206 -0.10225 0.98724 50.79288 } % Reading block file... Blocfile read: Length: 331 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 331 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 326 % The alignment: >2por (cluster A) sequence >1prn (cluster B) sequence >space >2por_dssp (cluster A) secondary structure from DSSP >1prn_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * EE -- 1 0.91600 1.01315 9.36000 VI EE 1 0.90800 1.03009 9.28000 KS EE 1 0.90500 1.03108 9.25000 LL EE 1 0.87700 1.17095 8.97000 SN EE 1 0.85600 1.25062 8.76000 GG EE 1 0.76600 1.47216 7.86000 DY EE 1 0.86400 1.14195 8.84000 AG EE 1 0.88600 1.15082 9.06000 RR EE 1 0.83300 1.34044 8.53000 MF EE 1 0.80600 1.45154 8.26000 GG EE 1 0.82500 1.41037 8.45000 VL EE 1 0.85500 1.30843 8.75000 MQ EE 1 0.86900 1.24433 8.89000 YY EE 1 0.84100 1.08103 8.61000 NV -E 1 0.77400 1.31017 7.94000 GE ST 1 0.71500 1.01125 7.35000 D T R - G - V T G T L - DE S- 0 0.00000 2.59795 0.17000 DD -S 0 0.26800 1.45393 2.88000 WT EE 1 0.84600 1.31557 8.66000 NI EE 1 0.84100 1.29531 8.61000 FI EE 1 0.78600 1.44787 8.06000 SS EE 1 0.79600 1.45348 8.16000 SS EE 1 0.76200 1.54752 7.82000 RR EE 1 0.68000 1.68438 7.00000 SL EE 1 0.77300 1.45444 7.93000 RR EE 1 0.76100 1.50078 7.81000 VI EE 1 0.83700 1.28640 8.57000 LN EE 1 0.82400 1.31414 8.44000 FI EE 1 0.83600 1.16630 8.56000 TV EE 1 0.74100 1.53717 7.61000 MG EE 1 0.77700 1.51238 7.97000 ST EE 1 0.83000 1.39702 8.50000 GT EE 1 0.73300 1.47516 7.53000 TE EE 1 0.71300 1.26972 7.33000 TT -- 1 0.61600 1.59515 6.36000 DD TT 1 0.49300 1.77041 5.13000 SQ TT 1 0.75500 0.93282 7.75000 GG -S 1 0.93000 0.78495 9.50000 LV -- 1 0.89100 1.02482 9.11000 ET EE 1 0.83800 1.29549 8.58000 FF EE 1 0.80200 1.43825 8.22000 GG EE 1 0.85200 1.25336 8.72000 AA EE 1 0.79100 1.47866 8.11000 SK EE 1 0.78100 1.48633 8.01000 FL EE 1 0.61300 1.63855 6.33000 KR EE 1 0.67000 1.40681 6.90000 AM GE 1 0.69700 1.32170 7.17000 Q E W E D E D T G T D - A G F G A G HG G- 0 0.00000 2.78466 0.00000 ET G- 0 0.03300 2.69147 0.53000 SA H- 0 0.19000 2.14414 2.10000 VG HB 0 0.36800 1.99857 3.88000 GN H- 1 0.66400 1.63258 6.84000 A H E T T T G T E S DA S- 0 0.12500 1.95541 1.45000 GA S- 0 0.29400 2.20789 3.14000 TQ EE 1 0.59700 1.59105 6.17000 VF EE 1 0.82400 1.31574 8.44000 FW EE 1 0.87900 1.13969 8.99000 LT EE 1 0.89700 0.95172 9.17000 SS EE 1 0.88400 1.13903 9.04000 GY EE 1 0.82700 1.04702 8.47000 AN TT FG TT GV EE 0 0.32300 1.15922 3.43000 KT EE 1 0.90600 1.04825 9.26000 IV EE 1 0.88400 1.04753 9.04000 ES EE 1 0.82300 1.31032 8.43000 MV EE 1 0.76100 1.50283 7.81000 GG EE 1 0.65300 1.72451 6.73000 DN SS 1 0.66500 1.73925 6.85000 AV -- 1 0.68300 1.67661 7.03000 LD B- 1 0.59000 1.78577 6.10000 GT -- 1 0.67300 1.56148 6.93000 AA HH 1 0.67700 1.32565 6.97000 SF HH 1 0.51200 1.84322 5.32000 ED HH 1 0.56600 1.73219 5.86000 AS HH 1 0.71300 1.30427 7.33000 LV HS 1 0.79700 1.42692 8.17000 A S FL HS 0 0.33300 2.00723 3.53000 GT -T 0 0.22500 1.96129 2.45000 DY -T 1 0.50100 0.94202 5.21000 LD ST 1 0.55400 1.51785 5.74000 YS -T 1 0.58900 1.69405 6.09000 EE -- 1 0.75400 1.48645 7.74000 VM -B 1 0.83900 1.27813 8.59000 GG TT 1 0.85300 1.28361 8.73000 YY TT 1 0.81300 1.25295 8.33000 TE TT 1 0.63300 1.68375 6.53000 DA TT 1 0.53600 1.82490 5.56000 LS -B 0 0.24700 2.03472 2.67000 D - D T R T GS S- 0 0.05400 2.43348 0.74000 GF -T 0 0.24500 1.81846 2.65000 NG ST 0 0.31900 2.18177 3.39000 DD SS 1 0.44400 1.72306 4.64000 IA -- 1 0.46700 1.75247 4.87000 PQ -- 1 0.43200 2.00523 4.52000 YS -S 0 0.16000 2.36320 1.80000 LS S- 0 0.19900 2.23908 2.19000 TF S- 1 0.50600 1.80601 5.26000 GF B- 1 0.54400 1.69312 5.64000 DA T- EY T- N - S - K S Y - D - A T RS ST LG SS TA -T 0 0.00000 2.84597 0.00000 AL BT 0 0.17100 1.36014 1.91000 ED TT 1 0.75700 1.41642 7.77000 DN TT 1 0.64500 1.53648 6.65000 NY B- 1 0.76400 0.94765 7.84000 PN -E 1 0.71500 1.47357 7.35000 VG EE 1 0.82600 1.34344 8.46000 LI EE 1 0.81400 1.43830 8.34000 LA EE 1 0.81100 1.35060 8.31000 YV EE 1 0.87500 1.01608 8.95000 TT EE 1 0.91100 0.98273 9.31000 YY EE 1 0.89100 0.91728 9.11000 SS EE 1 0.74400 1.37382 7.64000 AI EE 1 0.77800 1.21145 7.98000 GS TT 1 0.75200 1.44597 7.72000 AG TT 1 0.65600 1.72942 6.76000 FV EE 1 0.76900 1.51925 7.89000 SN EE 1 0.77300 1.52047 7.93000 VL EE 1 0.84700 1.32085 8.67000 AY EE 1 0.86900 1.25089 8.89000 AL EE 1 0.87800 1.19845 8.98000 SS EE 1 0.89700 1.08150 9.17000 MY EE 1 0.83900 1.09116 8.59000 SV -E 1 0.77300 1.23012 7.93000 DD -E G S KP BS VD S- GQ TT 0 0.16800 2.19990 1.88000 ET TT 1 0.57200 1.63143 5.92000 TV SS 1 0.61100 1.76326 6.31000 SD S- 0 0.29000 1.78794 3.10000 S G ES -G 0 0.00000 2.80336 0.01000 DL BG 0 0.18300 1.47392 2.03000 DV -S 1 0.78400 1.41448 8.04000 AT -- 1 0.78300 1.34879 8.03000 QE E- 1 0.83000 1.19651 8.50000 EE EE 1 0.91400 0.98801 9.34000 MF EE 1 0.90800 0.90630 9.28000 AG EE 1 0.85500 1.17349 8.75000 VI EE 1 0.85700 1.21397 8.77000 AA EE 1 0.79100 1.45359 8.11000 AA EE 1 0.73700 1.61639 7.57000 AD EE 1 0.71800 1.67611 7.38000 YW EE 1 0.70000 1.69070 7.20000 TS EE 1 0.68300 1.58102 7.03000 FN E- 1 0.50600 1.94069 5.26000 GD TS 1 0.45800 1.90933 4.78000 NM TS 1 0.70900 1.20400 7.29000 YI EE 1 0.86100 1.14814 8.81000 TS EE 1 0.78400 1.42255 8.04000 VL EE 1 0.79700 1.23687 8.17000 GA EE 1 0.60800 1.75776 6.28000 LA EE 1 0.75100 1.57582 7.71000 GA EE 1 0.79900 1.48780 8.19000 YY EE 1 0.79800 1.40179 8.18000 ET EE 1 0.81000 1.25155 8.30000 T E D S KA EG 0 0.01800 2.34283 0.38000 IG EG 0 0.13800 2.61111 1.58000 DG EG 0 0.13200 2.62099 1.52000 S - P S D - T T A T L T MI S- 0 0.00000 2.57415 0.20000 AV -T 0 0.13900 2.22377 1.59000 DD -T 1 0.48700 1.26160 5.07000 MN E- 1 0.69100 1.55692 7.11000 ED E- 1 0.81600 1.26503 8.36000 QI EE 1 0.72900 1.57548 7.49000 LA EE 1 0.66500 1.73058 6.85000 EF EE 1 0.75400 1.53658 7.74000 LV EE 1 0.84400 1.30140 8.64000 AG EE 1 0.85900 1.25414 8.79000 AA EE 1 0.80300 1.12192 8.23000 IA EE 1 0.63100 1.69491 6.51000 AY EE 1 0.68100 1.72533 7.01000 KK E- 1 0.68700 1.63236 7.07000 F - FN ES 0 0.29800 1.78207 3.18000 GD TS 1 0.75100 1.18303 7.71000 AA TS 1 0.78900 1.40027 8.09000 TG EE 1 0.80300 1.37211 8.23000 NT EE 1 0.64800 1.72851 6.68000 VV EE 1 0.68000 1.71255 7.00000 KG EE 1 0.62300 1.77570 6.43000 AL EE 1 0.65700 1.42267 6.77000 YN EE 1 0.72100 1.31511 7.41000 YW EE 1 0.86200 1.22010 8.82000 AY EE 1 0.72500 1.52165 7.45000 DD EE 0 0.36900 1.71213 3.89000 GN E- 0 0.05300 2.53306 0.73000 EG ET LL ET D E R H D H F H A H R H A H V H F T D T L - T - P - V - A S A S A - A - T - AS ES VT ET DA ET 0 0.00000 3.09715 0.00000 HG E- 0 0.10600 1.74189 1.26000 KD ES 1 0.78300 1.12084 8.03000 AQ EE 1 0.84300 1.26500 8.63000 YV EE 1 0.83000 1.31464 8.50000 GT EE 1 0.80000 0.97892 8.20000 LL EE 1 0.69700 1.51204 7.17000 SY EE 1 0.81600 1.36382 8.36000 VG EE 1 0.88700 1.04191 9.07000 DN EE 1 0.86200 1.25868 8.82000 SY EE 1 0.84800 1.33386 8.68000 TA EE 1 0.86900 1.21506 8.89000 FF EE 1 0.86600 1.16571 8.86000 GG TT 1 0.88400 1.12847 9.04000 AA TT 1 0.88300 1.11721 9.03000 TT EE 1 0.90800 0.68028 9.28000 TT EE 1 0.88900 1.08755 9.09000 VV EE 1 0.90400 1.04015 9.24000 GR EE 1 0.85300 0.78008 8.73000 GA EE 1 0.75200 1.42438 7.72000 YY EE 1 0.80400 1.46914 8.24000 VV EE 1 0.78300 1.52301 8.03000 QS EE 1 0.78700 1.50153 8.07000 VD EE 1 0.79000 1.50295 8.10000 LI EE 1 0.75500 1.55566 7.75000 DD E- 1 0.49400 1.29081 5.14000 I E D T TR TS IA TT 0 0.01700 2.50981 0.37000 DG ET 0 0.14800 2.45352 1.68000 DA E- 0 0.27800 2.08153 2.98000 VD E- 0 0.26800 2.22883 2.88000 TT E- 1 0.55000 1.76571 5.70000 YA EE 1 0.76500 1.50921 7.85000 YY EE 1 0.75300 1.58272 7.73000 GG EE 1 0.81000 1.42838 8.30000 LI EE 1 0.85100 1.27755 8.71000 GG EE 1 0.89200 1.06816 9.12000 AA EE 1 0.88100 0.95869 9.01000 SD EE 1 0.82500 1.27267 8.45000 YY EE 1 0.88300 1.15944 9.03000 DQ EE 1 0.86000 1.28709 8.80000 LF EE 1 0.85900 1.23125 8.79000 GA EE 1 0.57900 0.85325 5.99000 GE TT 0 0.25300 2.06051 2.73000 GG TT 1 0.65600 1.53334 6.76000 AV EE 1 0.79800 1.42450 8.18000 SK EE 1 0.72800 1.60061 7.48000 IV EE 1 0.78100 1.46583 8.01000 VS EE 1 0.86200 1.20799 8.82000 GG EE 1 0.90100 1.07208 9.21000 GS EE 1 0.92100 0.91657 9.41000 IV EE 1 0.91600 0.94960 9.36000 AQ EE 1 0.87700 1.20691 8.97000 DS EE 1 0.88100 1.21779 9.01000 NG E- 1 0.70200 1.13539 7.22000 D - LF ST 0 0.27800 2.07382 2.98000 PA ST 0 0.34100 2.19699 3.61000 NN S- 0 0.15900 2.39532 1.79000 S - DE -- 0 0.32900 1.92229 3.49000 MT -E 1 0.69100 0.93195 7.11000 VV EE 1 0.92400 0.97327 9.44000 AA EE 1 0.92000 0.78133 9.40000 DD EE 1 0.87700 1.14992 8.97000 LV EE 1 0.87300 1.23157 8.93000 GG EE 1 0.82700 1.40208 8.47000 VV EE 1 0.82900 1.39702 8.49000 KR EE 1 0.83600 1.31766 8.56000 FF EE 1 0.87200 1.17691 8.92000 KD EE 1 0.89800 1.13196 9.18000 *