% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb2ccy.ent 2ccya { CHAIN A 0.58761 -0.05814 0.80706 1.38375 0.80528 0.13958 -0.57625 3.45378 -0.07910 0.98851 0.12880 -45.80230 } /disk3/pdb/pdb1cgo.ent 1cgo { ALL 0.68516 -0.14534 0.71372 -5.66898 0.01871 -0.97606 -0.21676 44.49249 0.72812 0.16183 -0.66605 -6.46151 } % Reading block file... Blocfile read: Length: 130 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 130 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 129 % The alignment: >2ccya (cluster A) sequence >1cgo (cluster B) sequence >space >2ccya_dssp (cluster A) secondary structure from DSSP >1cgo_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * X - QF -- SA -S 0 0.40200 1.19396 4.22000 KK -S 1 0.61500 1.73059 6.35000 PP HH 1 0.57900 1.87244 5.99000 EE HH 1 0.59300 1.81037 6.13000 DD HH 1 0.73600 1.46876 7.56000 LA HH 1 0.77500 1.41159 7.95000 LV HH 1 0.82100 1.28528 8.41000 KK HH 1 0.81700 1.18790 8.37000 LY HH 1 0.89600 0.63639 9.16000 RR HH 1 0.90300 0.94256 9.23000 QQ HH 1 0.92000 0.60179 9.40000 GS HH 1 0.92000 0.87404 9.40000 LA HH 1 0.91300 0.92362 9.33000 ML HH 1 0.90400 0.45879 9.24000 QT HH 1 0.82900 1.11243 8.49000 TL HH 1 0.78600 1.32363 8.06000 LM HH 1 0.87800 0.86128 8.98000 KA HH 1 0.85600 1.06318 8.76000 SS HH 1 0.78100 1.37211 8.01000 QH HH 1 0.84600 1.11209 8.66000 WF HH 1 0.89200 0.62762 9.12000 VG HH 1 0.75800 1.16427 7.78000 PR HT 1 0.70900 1.36959 7.29000 IM HT 1 0.73500 1.32670 7.55000 AT HH 1 0.61900 1.68646 6.39000 GP HH 1 0.55100 1.77549 5.71000 FV HH 1 0.68400 1.48847 7.04000 AV HH 1 0.71100 1.49905 7.31000 AK TT 1 0.53400 1.82631 5.54000 GG TT 1 0.47700 1.98060 4.97000 KQ SS 1 0.45300 2.05277 4.73000 AA SS 1 0.60200 1.85938 6.22000 DP -- 1 0.63300 1.81787 6.53000 LY -- 1 0.54800 1.72278 5.68000 PD -- 0 0.19000 2.33345 2.10000 A H AA TH 0 0.17300 2.10649 1.93000 DQ TH 0 0.41300 1.43474 4.33000 AI HH 1 0.85800 1.24091 8.78000 AK HH 1 0.85400 1.28342 8.74000 QA HH 1 0.78600 1.49853 8.06000 RN HH 1 0.79200 1.49655 8.12000 AV HH 1 0.81000 1.40293 8.30000 EE HH 1 0.72100 1.63615 7.41000 NV HH 1 0.76700 1.56369 7.87000 ML HH 1 0.76700 1.57014 7.87000 AK HH 1 0.76200 1.58423 7.82000 MT HH 1 0.78000 1.53941 8.00000 VL HH 1 0.74800 1.59126 7.68000 AT HH 1 0.67200 1.69292 6.92000 KA HH 1 0.73100 1.57784 7.51000 LL HS 1 0.73800 1.55352 7.58000 AP GG 1 0.66500 1.50597 6.85000 PW GG 1 0.72900 1.24135 7.49000 IA GG 1 0.82000 1.09348 8.40000 GA GG 1 0.79600 1.27407 8.16000 WF GS 1 0.90400 0.75257 9.24000 AG -- 1 0.93500 0.82683 9.55000 KP TT 1 0.91700 0.80933 9.37000 GG TT 1 0.81800 1.19595 8.38000 TT -- 1 0.83600 0.65856 8.56000 E T A T L - PE T- NG T- 0 0.04600 2.40390 0.66000 GG -T 0 0.32800 0.84130 3.48000 ED -T 1 0.92700 0.55049 9.47000 TA BB 1 0.89500 1.05054 9.15000 KR -- 1 0.92400 0.98897 9.44000 PP HT 1 0.92400 0.95344 9.44000 EE HH 1 0.93500 0.73947 9.55000 AI HH 1 0.92300 0.90070 9.43000 FW HH 1 0.86800 1.07334 8.88000 G T SS TH 1 0.54400 1.72716 5.64000 KD TT 1 0.63700 1.44980 6.57000 SA HH 1 0.84600 1.14967 8.66000 AA HH 1 0.90200 1.04278 9.22000 ES HH 1 0.87000 1.22114 8.90000 FF HH 1 0.87500 1.07519 8.95000 LK HH 1 0.84700 1.18227 8.67000 EQ HH 1 0.85900 1.22771 8.79000 GK HH 1 0.84900 1.31252 8.69000 WQ HH 1 0.85600 1.30169 8.76000 KQ HH 1 0.89200 1.15066 9.12000 AA HH 1 0.87400 1.24786 8.94000 LF HH 1 0.85000 1.32853 8.70000 AQ HH 1 0.86900 1.26733 8.89000 TD HH 1 0.86100 1.29213 8.81000 EN HH 1 0.88300 1.12475 9.03000 SI HH 1 0.87500 1.11937 8.95000 TV HH 1 0.83600 1.30722 8.56000 KK HH 1 0.85600 1.19028 8.76000 LL HH 1 0.89500 0.83147 9.15000 AS HH 1 0.86300 1.21200 8.83000 AA HH 1 0.85000 1.20983 8.70000 AA HH 1 0.88300 0.79559 9.03000 AA HH 1 0.82200 1.19621 8.42000 KD HH 1 0.68800 1.61645 7.08000 A T AG HT 1 0.65600 1.68532 6.76000 GD -- 1 0.80900 1.23339 8.29000 PL HH 1 0.90300 1.05533 9.23000 DD HH 1 0.88000 1.20162 9.00000 AK HH 1 0.88000 1.17313 9.00000 LL HH 1 0.92400 0.84551 9.44000 KR HH 1 0.92800 0.90188 9.48000 AA HH 1 0.90000 1.05323 9.20000 QA HH 1 0.91800 0.94785 9.38000 AF HH 1 0.94100 0.77903 9.61000 AG HH 1 0.93000 0.93151 9.50000 AD HH 1 0.91700 1.03650 9.37000 TV HH 1 0.91500 1.01797 9.35000 GG HH 1 0.93300 0.86905 9.53000 KA HH 1 0.93700 0.81681 9.57000 VS HH 1 0.94500 0.60389 9.65000 CC HH 1 0.94100 0.66111 9.61000 KK HH 1 0.91900 0.93693 9.39000 AA HH 1 0.94400 0.68988 9.64000 CC HH 1 0.94200 0.76349 9.62000 HH HH 1 0.92400 0.96039 9.44000 ED HH 1 0.91300 1.06349 9.33000 EA HH 1 0.92000 1.00277 9.40000 FY HH 1 0.93900 0.83215 9.59000 KR BB 1 0.93000 0.88837 9.50000 Q - *