% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb2bb2.ent 2bb2.1 { _ -2 _ to _ 85 _ 0.70814 -0.40474 -0.57856 3.51954 0.08246 0.86120 -0.50153 1.32461 0.70124 0.30744 0.64323 -0.68620 } /disk3/pdb/pdb2gcr.ent 2gcr.1 { _ 1 _ to _ 85 _ 0.84676 0.52991 -0.04692 -16.73584 -0.04799 -0.01172 -0.99876 98.71124 -0.52980 0.84796 0.01552 13.91522 } % Reading block file... Blocfile read: Length: 89 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 89 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 89 % The alignment: >2bb2.1 (cluster A) sequence >2gcr.1 (cluster B) sequence >space >2bb2.1_dssp (cluster A) secondary structure from DSSP >2gcr.1_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * L - N - PG -- 1 0.84700 1.18418 8.67000 KK E- 1 0.89200 0.61923 9.12000 II EE 1 0.92600 0.76960 9.46000 IT EE 1 0.93500 0.76616 9.55000 IF EE 1 0.93100 0.89447 9.51000 FY EE 1 0.91500 1.02362 9.35000 EE ES 1 0.86800 1.16923 8.88000 QD ES 1 0.91200 0.85850 9.32000 ER TG 1 0.92800 0.87258 9.48000 NG TG 1 0.93100 0.69804 9.51000 FF TG 1 0.92800 0.76308 9.48000 QQ E- 1 0.88200 0.78789 9.02000 GG ES 1 0.79800 1.32143 8.18000 HR ES 1 0.87900 1.18518 8.99000 SH EE 1 0.87000 1.22163 8.90000 HY EE 1 0.90700 1.03554 9.27000 EE EE 1 0.92400 0.96418 9.44000 LC EE 1 0.93900 0.75149 9.59000 NS SS 1 0.92800 0.91661 9.48000 GS SS 1 0.93900 0.76693 9.59000 PD -- 1 0.91100 0.99489 9.31000 CH BB 1 0.86000 1.21756 8.80000 PS SS 1 0.91300 0.93890 9.33000 NN -- 1 0.92000 0.99828 9.40000 LL G- 1 0.85200 1.14945 8.72000 KQ GT 1 0.79400 0.96656 8.14000 EP GT 1 0.71000 1.49632 7.30000 T G GY ST 0 0.30600 1.50639 3.26000 VF -- 1 0.74800 1.26416 7.68000 ES SS 1 0.88300 0.94807 9.03000 KR S- 1 0.92900 0.63936 9.49000 AC -- 1 0.90800 0.93878 9.28000 GN -S 1 0.89300 1.09228 9.13000 SS EE 1 0.88400 1.03340 9.04000 VI EE 1 0.91600 0.55861 9.36000 LR EE 1 0.92600 0.82363 9.46000 VV EE 1 0.94500 0.30843 9.65000 QD E- 1 0.94700 0.58662 9.67000 AS ES 1 0.89500 0.87312 9.15000 GG -S 1 0.83700 1.11280 8.57000 PC -E 1 0.91600 0.64412 9.36000 WW EE 1 0.95300 0.60436 9.73000 VM EE 1 0.95300 0.58095 9.73000 GL EE 1 0.94200 0.58804 9.62000 YY EE 1 0.92100 0.82157 9.41000 EE ES 1 0.88500 1.10338 9.05000 QQ ES 1 0.92500 0.82901 9.45000 AP TT 1 0.93900 0.78431 9.59000 NN TT 1 0.94900 0.55122 9.69000 CF TS 1 0.94500 0.70311 9.65000 KT E- 1 0.92800 0.86490 9.48000 GG ES 1 0.88900 1.09698 9.09000 EC E- 1 0.92400 0.84674 9.44000 QQ EE 1 0.90800 0.96189 9.28000 FY EE 1 0.93700 0.47726 9.57000 VF EE 1 0.94600 0.71193 9.66000 FL EE 1 0.93400 0.82042 9.54000 ER -- 1 0.94700 0.57276 9.67000 KR SS 1 0.95600 0.45930 9.76000 GG EE 1 0.95500 0.42958 9.75000 ED EE 1 0.94600 0.58105 9.66000 YY EE 1 0.92700 0.88116 9.47000 PP -S 1 0.91100 0.92908 9.31000 RD SS 1 0.88600 1.06154 9.06000 WY GS 1 0.83300 1.28407 8.53000 DQ GG 1 0.90600 0.86630 9.26000 SQ GG 1 0.92200 0.96465 9.42000 WW TG 1 0.87600 0.99036 8.96000 T - S S SM ST 0 0.15300 2.34320 1.73000 RG -- 0 0.17700 2.23094 1.97000 RF SS 1 0.44900 1.86259 4.69000 TS -S 1 0.62900 1.71989 6.49000 DD -S 1 0.62700 1.73076 6.47000 SS -- 1 0.78300 1.34197 8.03000 LV -- 1 0.86900 1.15221 8.89000 SR -- 1 0.90200 1.05337 9.22000 SS EE 1 0.92700 0.84320 9.47000 LC EE 1 0.90900 0.89031 9.29000 RR EE 1 0.86200 1.11188 8.82000 PL EE 1 0.92600 0.62543 9.46000 II -E 1 0.95200 0.44160 9.72000 KP -- 1 0.83300 0.75104 8.53000 VH -- 1 0.66100 1.53627 6.81000 D - *