% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1sgt.ent 1sgt { ALL -0.55173 -0.17777 0.81486 24.19376 -0.39404 0.91664 -0.06688 15.65403 -0.73503 -0.35796 -0.57583 57.99654 } /disk3/pdb/pdb1hcg.ent 1hcga { CHAIN A 0.49431 0.85936 0.13066 4.10413 0.56166 -0.43053 0.70646 -63.32050 0.66341 -0.27585 -0.69553 17.19597 } % Reading block file... Blocfile read: Length: 250 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 250 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 246 % The alignment: >1sgt (cluster A) sequence >1hcga (cluster B) sequence >space >1sgt_dssp (cluster A) secondary structure from DSSP >1hcga_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * VI -- 1 0.94800 0.72431 9.68000 VV BB 1 0.90400 0.67232 9.24000 GG TS 1 0.77100 1.24465 7.91000 GG -- 1 0.77500 1.37671 7.95000 TQ EE 1 0.83100 1.33472 8.51000 RE EE 1 0.89200 0.99567 9.12000 AC -- 1 0.91100 0.74974 9.31000 AK -- 1 0.83100 1.17892 8.51000 QD TT 1 0.71300 1.51290 7.33000 GG TT 1 0.83700 1.11552 8.57000 EE SS 1 0.90600 0.96795 9.26000 FC SS 1 0.88700 1.16230 9.07000 PP TT 1 0.91100 1.01564 9.31000 FW TT 1 0.89300 1.11349 9.13000 MQ EE 1 0.91600 0.89708 9.36000 VA EE 1 0.92500 0.85084 9.45000 RL EE 1 0.94300 0.76982 9.63000 LL EE 1 0.92800 0.70368 9.48000 SI TE 1 0.56700 1.12076 5.87000 N E E T E T N S E - MG TE 0 0.00100 2.42006 0.21000 GF TE 0 0.27600 0.74098 2.96000 CC EE 1 0.94000 0.76820 9.60000 GG EE 1 0.94600 0.64272 9.66000 GG EE 1 0.94000 0.67848 9.60000 AT EE 1 0.92800 0.86393 9.48000 LI EE 1 0.91100 0.92365 9.31000 YL E- 1 0.90000 0.99515 9.20000 AS ES 1 0.82600 1.14581 8.46000 QE TS 1 0.78300 1.06572 8.03000 DF TS 1 0.81200 1.18649 8.32000 IY EE 1 0.92400 0.79734 9.44000 VI EE 1 0.94400 0.68048 9.64000 LL EE 1 0.94100 0.65202 9.61000 TT EE 1 0.94700 0.61738 9.67000 AA -- 1 0.94900 0.68488 9.69000 AA GG 1 0.94200 0.77642 9.62000 HH GG 1 0.94700 0.60021 9.67000 CC GG 1 0.93700 0.78215 9.57000 VL SG 1 0.66100 0.89730 6.81000 SY SG G - S S G E NQ EG NA -- TK -S 0 0.00000 3.23142 0.00000 SR -S 0 0.07300 1.92573 0.93000 IF -E 1 0.61000 1.46840 6.30000 TK EE 1 0.78300 1.03620 8.03000 AV EE 1 0.93600 0.82718 9.56000 TR EE 1 0.93900 0.82739 9.59000 GV EE 1 0.91000 0.63351 9.30000 GG SS 1 0.78700 1.11536 8.07000 VD -- 1 0.62400 1.55915 6.44000 VR SS 1 0.72900 1.04848 7.49000 DN BB 1 0.69000 1.46861 7.10000 LT TT E T Q - QE T- SE -- 0 0.37900 1.72538 3.99000 GG TS 1 0.45800 1.70739 4.78000 AG T- 1 0.63000 1.64977 6.50000 AE -- 1 0.80700 0.91867 8.27000 VA EE 1 0.93400 0.69208 9.54000 KV EE 1 0.93900 0.83775 9.59000 VH EE 1 0.93300 0.91166 9.53000 RE EE 1 0.93400 0.92369 9.54000 SV EE 1 0.92200 0.88756 9.42000 TE EE 1 0.90500 1.01038 9.25000 KV EE 1 0.92800 0.85134 9.48000 VV EE 1 0.94400 0.49817 9.64000 LI EE 1 0.94400 0.63157 9.64000 QK EE 1 0.92500 0.82681 9.45000 AH -B 1 0.88400 0.94655 9.04000 PN TT 1 0.83700 1.24211 8.57000 GR TT 1 0.81100 1.34594 8.31000 YF -- 1 0.89500 0.95273 9.15000 NT -- 1 0.73900 1.02809 7.59000 K T E T GT ST TY S- 0 0.24800 1.87894 2.68000 GD S- 1 0.74300 1.20293 7.63000 KF -S 1 0.91800 0.89114 9.38000 DD -- 1 0.93900 0.78515 9.59000 WI -- 1 0.94600 0.62943 9.66000 AA EE 1 0.94900 0.40263 9.69000 LV EE 1 0.94100 0.72505 9.61000 IL EE 1 0.93300 0.89957 9.53000 KR EE 1 0.94000 0.85513 9.60000 LL EE 1 0.92100 0.89091 9.41000 AK SS 1 0.87200 1.07284 8.92000 QT SS 1 0.89100 0.99143 9.11000 PP -- 1 0.88700 1.15211 9.07000 II -- 1 0.87200 1.18852 8.92000 NT -- 1 0.79400 1.24667 8.14000 F - R B M T N T QV SB 0 0.08200 1.81475 1.02000 PA -- 1 0.71700 1.38242 7.37000 TP -- 1 0.86100 1.11047 8.81000 LA -- 1 0.88900 1.00794 9.09000 KC EB 1 0.75000 1.13908 7.70000 IL E- 1 0.67300 1.46718 6.93000 AP -- 1 0.63100 1.74067 6.51000 TE S- 1 0.65200 1.64547 6.72000 TR SH D H W H A H E H TS SH AT TH 0 0.41700 1.69072 4.37000 YL TT 1 0.76200 0.96326 7.82000 NM ST 1 0.71100 1.13433 7.31000 T T QQ SS 0 0.32600 1.90249 3.46000 GK SS 1 0.66800 1.14534 6.88000 TT EE 1 0.91400 0.84923 9.34000 FG EE 1 0.90500 1.00127 9.25000 TI EE 1 0.92300 0.88733 9.43000 VV EE 1 0.94000 0.73772 9.60000 AS EE 1 0.95200 0.45938 9.72000 GG EE 1 0.95400 0.44491 9.74000 WF SS 1 0.91000 0.72823 9.30000 GG SS 1 0.83800 1.10269 8.58000 AR -- 1 0.91200 0.48662 9.32000 NT S- R S E T G T G - S - QH -- QS -- 0 0.00000 2.34225 0.00000 RT S- 0 0.32800 1.36484 3.48000 YR BB 1 0.85600 1.08892 8.76000 LL -- 1 0.90000 0.67959 9.20000 LK EE 1 0.92300 0.89402 9.43000 KM EE 1 0.93100 0.83216 9.51000 AL EE 1 0.92400 0.83507 9.44000 NE EE 1 0.92500 0.91574 9.45000 VV EE 1 0.92500 0.89890 9.45000 PP EE 1 0.94500 0.51379 9.65000 FY EB 1 0.95300 0.45793 9.73000 VV E- 1 0.94200 0.73204 9.62000 SD -- 1 0.94100 0.80468 9.61000 DR HH 1 0.94500 0.76338 9.65000 AN HH 1 0.94900 0.59228 9.69000 AS HH 1 0.93900 0.68177 9.59000 CC HH 1 0.93100 0.76849 9.51000 RK HH 1 0.94500 0.64309 9.65000 SL HH 1 0.92600 0.69636 9.46000 AS HH 1 0.87800 1.13641 8.98000 YS H- 0 0.39500 1.23726 4.15000 GS GS 0 0.13100 2.28962 1.51000 NF GS 0 0.20600 2.23420 2.26000 EI G- 1 0.52600 1.21419 5.46000 LI -- 1 0.91000 0.95564 9.30000 V - AT T- 0 0.35600 1.95164 3.76000 NQ TT 1 0.67700 1.20372 6.97000 EN TT 1 0.91800 0.82928 9.38000 EM EB 1 0.92900 0.79681 9.49000 IF E- 1 0.90400 1.00675 9.24000 CC E- 1 0.93500 0.80083 9.55000 AA EB 1 0.94500 0.65592 9.65000 GG SS 1 0.91600 0.77722 9.36000 YY -- 1 0.85700 1.06830 8.77000 P T DD TS 1 0.50200 1.71799 5.22000 TT TS 1 0.58800 0.95681 6.08000 GK -S 0 0.31000 1.86534 3.30000 GQ -S 1 0.63100 0.89156 6.51000 VE -- 1 0.92300 0.93560 9.43000 DD BB 1 0.93900 0.70337 9.59000 TA -- 1 0.94800 0.68443 9.68000 CC -- 1 0.94600 0.61667 9.66000 QQ TT 1 0.91800 0.89772 9.38000 GG TT 1 0.94600 0.46695 9.66000 DD -T 1 0.95400 0.52616 9.74000 SS TT 1 0.94900 0.63079 9.69000 GG TT 1 0.94600 0.72809 9.66000 GG -- 1 0.93800 0.63869 9.58000 PP EE 1 0.88700 0.99917 9.07000 MH EE 1 0.92300 0.69302 9.43000 FV EE 1 0.88900 0.84821 9.09000 RT EE 1 0.80000 1.16611 8.20000 KR EE 1 0.79700 0.98771 8.17000 DF -S 1 0.53800 1.40622 5.58000 N T AK TS 0 0.21900 2.02341 2.39000 DD SS 1 0.46900 1.49331 4.89000 ET -- 1 0.83900 0.80128 8.59000 WY EE 1 0.94800 0.49529 9.68000 IF EE 1 0.94300 0.72303 9.63000 QV EE 1 0.93100 0.90904 9.51000 VT EE 1 0.94200 0.79317 9.62000 GG EE 1 0.93900 0.74570 9.59000 II EE 1 0.94600 0.60761 9.66000 VV EE 1 0.95600 0.54215 9.76000 SS EE 1 0.95400 0.58717 9.74000 WW EE 1 0.95300 0.38946 9.73000 GG -E 1 0.94300 0.69769 9.63000 YE SS 1 0.95200 0.34248 9.72000 GG SS 1 0.95100 0.60187 9.71000 CC SS 1 0.94500 0.76164 9.65000 AA SS 1 0.93700 0.68279 9.57000 RR -- 1 0.88600 0.94360 9.06000 PK TT 1 0.83200 1.14943 8.52000 GG TT 1 0.87800 1.02689 8.98000 YK -- 1 0.92400 0.88221 9.44000 PY -- 1 0.94600 0.52496 9.66000 GG EE 1 0.95500 0.49071 9.75000 VI EE 1 0.95700 0.41331 9.77000 YY EE 1 0.95800 0.36888 9.78000 TT EE 1 0.95200 0.51727 9.72000 EK EE 1 0.94700 0.69588 9.67000 VV HS 1 0.95100 0.62162 9.71000 ST HG 1 0.95200 0.54237 9.72000 TA HG 1 0.94500 0.68676 9.65000 FF HG 1 0.94000 0.77223 9.60000 AL HH 1 0.93900 0.75874 9.59000 SK HH 1 0.93500 0.71566 9.55000 AW HH 1 0.92000 0.85344 9.40000 II HH 1 0.91100 0.97535 9.31000 AD HH 1 0.91600 0.97188 9.36000 SR HH 1 0.90400 1.01600 9.24000 AS HH 1 0.88000 1.09305 9.00000 AM HT 1 0.87500 1.15456 8.95000 RK HT 1 0.88300 1.07972 9.03000 TT T- 1 0.72100 1.35018 7.41000 R - G - L S P S K B A - *