% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1osa.ent 1osa { ALL -0.32178 -0.71923 0.61579 43.50011 -0.92994 0.36225 -0.06285 20.14968 -0.17783 -0.59291 -0.78539 69.64494 } /disk3/pdb/pdb1scm.ent 1scmb { CHAIN B -0.19722 0.82284 0.53300 -20.76951 -0.21566 0.49392 -0.84227 66.29316 -0.95640 -0.28104 0.08007 60.14126 } % Reading block file... Blocfile read: Length: 180 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 180 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 174 % The alignment: >1osa (cluster A) sequence >1scmb (cluster B) sequence >space >1osa_dssp (cluster A) secondary structure from DSSP >1scmb_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * A - E - Q S LL -- TP -- 0 0.19500 2.44691 2.15000 EQ HH 0 0.29700 2.30879 3.17000 EK HH 0 0.35000 2.17593 3.70000 QQ HH 1 0.45000 1.92900 4.70000 II HH 1 0.65200 1.64704 6.72000 AQ HT 1 0.66500 1.63301 6.85000 EE HT 1 0.76000 1.41385 7.80000 FM HH 1 0.75200 1.47891 7.72000 KK HH 1 0.81400 1.18499 8.34000 EE HH 1 0.91600 0.67980 9.36000 AA HH 1 0.92100 0.91203 9.41000 FF HH 1 0.94200 0.65595 9.62000 AS HH 1 0.94600 0.58511 9.66000 LM HH 1 0.91300 0.82896 9.33000 FI HH 1 0.89400 1.01239 9.14000 DD -- 1 0.89400 1.08256 9.14000 KV T- 1 0.87000 1.18502 8.90000 DD TS 1 0.82100 1.37645 8.41000 GR -S 1 0.86000 1.26340 8.80000 DD SS 1 0.88100 1.10824 9.01000 GG SS 1 0.86700 1.05638 8.87000 TF -S 1 0.92000 0.58202 9.40000 IV BB 1 0.92000 0.79638 9.40000 TS -- 1 0.90300 1.01407 9.23000 TK HH 1 0.91400 1.04404 9.34000 KE HH 1 0.90800 0.99145 9.28000 ED HH 1 0.93700 0.58270 9.57000 LI HH 1 0.94600 0.65725 9.66000 GK HH 1 0.92000 0.84751 9.40000 TA HH 1 0.86500 1.15511 8.85000 VI HH 1 0.85300 1.28029 8.73000 MS HH 1 0.87400 1.26227 8.94000 RE HH 1 0.85200 1.29929 8.72000 SQ HH 1 0.77900 1.48004 7.99000 LL TH 1 0.68600 1.59330 7.06000 GG TS 1 0.72300 1.30673 7.43000 QR -S 1 0.68200 1.26615 7.02000 NA -- 1 0.64600 1.55488 6.66000 PP -- 1 0.75400 1.54547 7.74000 TD -- 1 0.71000 1.47016 7.30000 ED HS 1 0.64300 1.58174 6.63000 AK HH 1 0.53500 1.76633 5.55000 EE HH 1 0.64500 1.42559 6.65000 LL HH 1 0.86900 0.83629 8.89000 QT HH 1 0.93000 0.38459 9.50000 DA HH 1 0.91400 0.88298 9.34000 MM HH 1 0.89000 1.12503 9.10000 IL HH 1 0.90000 1.08471 9.20000 NK HT 1 0.87700 0.85133 8.97000 EE HT V H D - A T D T GA -S NP SS GG SS 0 0.12000 2.47283 1.40000 TP S- 0 0.29000 2.01626 3.10000 IL BB 1 0.68400 1.21026 7.04000 DN -- 1 0.86300 1.12918 8.83000 FF HH 1 0.88700 0.98512 9.07000 PT HH 1 0.85100 1.16000 8.71000 EM HH 1 0.85700 1.10246 8.77000 FF HH 1 0.91800 0.82634 9.38000 LL HH 1 0.88800 0.45331 9.08000 SS HH 1 0.78700 1.14996 8.07000 LI HH 1 0.68300 1.54912 7.03000 MF HH 1 0.72900 1.54058 7.49000 AS HH 1 0.67000 1.41366 6.90000 RD HS 0 0.36600 1.97086 3.86000 KK HS 0 0.33300 2.18060 3.53000 ML HS 0 0.41700 2.06609 4.37000 KS HS 0 0.29200 2.09114 3.12000 EG HS QT HS DD H- SS H- EE HT EE HT T H I H R H N H A H F H A H M T EF HT LD H- IE HT EQ HT AE H- FT H- KK HS 0 0.00000 3.23220 0.00000 VK HS 0 0.10100 2.08589 1.21000 FL HE 1 0.45500 2.06481 4.75000 DN -E 0 0.31500 2.14360 3.35000 RI TH DE TH GY -H N S G S L - I B S - A H A H E H L H R H H H V H M H T H N H L T G T E - K - L - T - D H D H EI HH VK HH DD HH EL HH ML HH 0 0.00000 3.05447 0.01000 IE HH 0 0.08300 2.52081 1.03000 RN HH 0 0.17500 2.25043 1.95000 M S G S ED HS 0 0.00000 2.81821 0.10000 AN H- 0 0.16600 1.87751 1.86000 DF -- 0 0.05200 2.64457 0.72000 I S D S G S D S G S H S I B NN -- YK HH 0 0.05500 2.63405 0.75000 ED HH 0 0.13000 2.21179 1.50000 EE HH 0 0.11800 2.40114 1.38000 M H FR HH 0 0.00000 3.13101 0.00000 VM HH 0 0.07200 2.37480 0.92000 RT HH 0 0.10000 2.61025 1.20000 MF HH 0 0.03600 2.79324 0.56000 MK HH 0 0.10700 2.61070 1.27000 VE TS 0 0.26700 2.25086 2.87000 SA -- 0 0.27600 3.96701 2.96000 P - V E E E G T G T K E F E D - Y H V H K H F H T H A H M H I H *