% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1myt.ent 1myt { ALL -0.25419 -0.26741 -0.92951 99.27853 -0.61730 -0.69496 0.36872 1.91266 -0.74454 0.66749 0.01160 11.53654 } /disk3/pdb/pdb1ymb.ent 1ymb { ALL 0.61229 0.02919 -0.79010 21.24168 -0.50510 0.78326 -0.36250 -41.87780 0.60824 0.62101 0.49436 -19.75469 } % Reading block file... Blocfile read: Length: 152 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 152 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 152 % The alignment: >1myt (cluster A) sequence >1ymb (cluster B) sequence >space >1myt_dssp (cluster A) secondary structure from DSSP >1ymb_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * G - L - S - D H AG -H 1 0.59500 1.82809 6.15000 DE HH 1 0.72100 1.53456 7.41000 FW HH 1 0.77600 1.34069 7.96000 DQ HH 1 0.74200 1.35174 7.62000 AQ HH 1 0.88600 0.89761 9.06000 VV HH 1 0.92800 0.83519 9.48000 LL HH 1 0.93000 0.36233 9.50000 KN HH 1 0.91700 0.87388 9.37000 CV TH 1 0.91200 0.96565 9.32000 WW TH 1 0.91900 0.87359 9.39000 GG HH 1 0.90900 0.89811 9.29000 PK HH 1 0.85000 1.22482 8.70000 VV HH 1 0.88900 0.89361 9.09000 EE HH 1 0.88700 0.94674 9.07000 AA TT 1 0.87300 1.20560 8.93000 DD TT 1 0.85400 1.28421 8.74000 YI HH 1 0.88600 1.05234 9.06000 TA HH 1 0.90200 0.94803 9.22000 TG HH 1 0.88700 1.14102 9.07000 MH HH 1 0.90900 1.05482 9.29000 GG HH 1 0.93400 0.87416 9.54000 GQ HH 1 0.93400 0.80796 9.54000 LE HH 1 0.89900 1.06073 9.19000 VV HH 1 0.92200 0.95157 9.42000 LL HH 1 0.93200 0.88738 9.52000 TI HH 1 0.91700 1.02655 9.37000 RR HH 1 0.91200 1.06184 9.32000 LL HH 1 0.91900 1.00376 9.39000 FF HH 1 0.91200 1.04926 9.32000 KT HH 1 0.88500 1.18393 9.05000 EG HH 1 0.90500 1.06897 9.25000 HH -- 1 0.91300 1.04253 9.33000 PP GH 1 0.91600 1.05475 9.36000 EE GH 1 0.90800 1.09185 9.28000 TT GH 1 0.92600 0.95939 9.46000 QL GH 1 0.93700 0.83797 9.57000 KE GT 1 0.92400 0.93893 9.44000 LK GT 1 0.90200 1.09055 9.22000 FF -- 1 0.89900 1.05982 9.19000 PD TT 1 0.85900 1.16464 8.79000 KK TT 1 0.91300 0.82100 9.33000 FF TT 1 0.94300 0.70767 9.63000 AK TT 1 0.81300 0.91334 8.33000 GH TT 1 0.53000 1.62302 5.50000 IL -- 1 0.71600 0.90904 7.36000 AK -- 1 0.74900 1.40414 7.69000 T S QE HH 1 0.57000 1.83264 5.90000 AA HH 1 0.49600 1.72037 5.16000 DE HH 1 0.72000 0.53691 7.40000 IM HH 1 0.92000 0.79991 9.40000 AK TH 1 0.59300 1.17769 6.13000 GA TT 0 0.31200 1.88296 3.32000 NS -- 1 0.67700 1.17552 6.97000 AE HH 1 0.91700 0.82423 9.37000 AD HH 1 0.94700 0.76282 9.67000 IL HH 1 0.94600 0.77124 9.66000 SK HH 1 0.93600 0.88037 9.56000 AK HH 1 0.94200 0.76734 9.62000 HH HH 1 0.94000 0.57026 9.60000 GG HH 1 0.92100 0.92395 9.41000 AT HH 1 0.94300 0.77881 9.63000 TV HH 1 0.94800 0.73150 9.68000 VV HH 1 0.95000 0.71043 9.70000 LL HH 1 0.94900 0.72092 9.69000 KT HH 1 0.94600 0.76365 9.66000 KA HH 1 0.94800 0.72575 9.68000 LL HH 1 0.93900 0.78744 9.59000 GG HH 1 0.94900 0.47948 9.69000 EG HH 1 0.94900 0.61314 9.69000 LI HH 1 0.94100 0.79245 9.61000 LL HH 1 0.94400 0.71749 9.64000 KK HH 1 0.95100 0.49367 9.71000 AK TT 1 0.95300 0.56260 9.73000 KK TT 1 0.95100 0.40228 9.71000 GG TT 1 0.94000 0.74121 9.60000 SH -- 1 0.95000 0.57484 9.70000 HH -- 1 0.94400 0.77244 9.64000 AE HH 1 0.94800 0.69385 9.68000 AA HH 1 0.94200 0.76864 9.62000 IE HH 1 0.94400 0.76556 9.64000 LL HH 1 0.94900 0.67457 9.69000 KK HH 1 0.93800 0.83586 9.58000 PP HH 1 0.94600 0.68813 9.66000 LL HH 1 0.93800 0.75552 9.58000 AA HH 1 0.94600 0.43946 9.66000 NQ HH 1 0.94300 0.74555 9.63000 SS HH 1 0.94800 0.68973 9.68000 HH HH 1 0.95200 0.51907 9.72000 AA HH 1 0.93300 0.70451 9.53000 TT HH 1 0.90400 1.03888 9.24000 KK TT 1 0.89800 1.06106 9.18000 HH ST 1 0.93400 0.63522 9.54000 KK -- 1 0.94800 0.67933 9.68000 II -- 1 0.95000 0.62906 9.70000 PP -- 1 0.95200 0.65507 9.72000 II TH 1 0.95000 0.65528 9.70000 NK HH 1 0.95300 0.57662 9.73000 NY HH 1 0.95600 0.49693 9.76000 FL HH 1 0.95600 0.47735 9.76000 KE HH 1 0.95100 0.56292 9.71000 LF HH 1 0.95400 0.39932 9.74000 II HH 1 0.95600 0.51338 9.76000 SS HH 1 0.95400 0.50543 9.74000 ED HH 1 0.94300 0.66012 9.63000 VA HH 1 0.92500 0.85802 9.45000 LI HH 1 0.94300 0.65835 9.63000 VI HH 1 0.93700 0.79396 9.57000 KH HH 1 0.91200 0.98071 9.32000 VV HH 1 0.92700 0.70301 9.47000 ML HH 1 0.88100 1.00231 9.01000 HH HH 1 0.84100 1.26308 8.61000 ES HH 1 0.82000 1.31726 8.40000 KK HH 1 0.67200 0.91744 6.92000 H S P T AG ST GD -T 0 0.13800 1.89563 1.58000 LF -S 1 0.67900 1.44733 6.99000 DG -- 1 0.73100 1.45038 7.51000 AA HH 1 0.78700 1.44895 8.07000 GD HH 1 0.82600 1.32834 8.46000 GA HH 1 0.89700 1.08373 9.17000 QQ HH 1 0.91800 1.04831 9.38000 TG HH 1 0.90200 1.06154 9.22000 AA HH 1 0.92400 0.85401 9.44000 LM HH 1 0.94100 0.81823 9.61000 RT HH 1 0.93200 0.85380 9.52000 NK HH 1 0.92300 0.94604 9.43000 VA HH 1 0.93400 0.91630 9.54000 ML HH 1 0.93500 0.89385 9.55000 GE HH 1 0.93200 0.92180 9.52000 IL HH 1 0.92800 0.96382 9.48000 IF HH 1 0.91600 0.97514 9.36000 IR HH 1 0.94200 0.63386 9.62000 AN HH 1 0.95000 0.69329 9.70000 DD HH 1 0.94700 0.71810 9.67000 LI HH 1 0.94500 0.66962 9.65000 EA HH 1 0.95000 0.62146 9.70000 AA HH 1 0.95300 0.57161 9.73000 NK HH 1 0.94100 0.72490 9.61000 YY HH 1 0.92600 0.90518 9.46000 KK HH 1 0.90400 1.06960 9.24000 EE HH 1 0.90200 1.09627 9.22000 LL HT 1 0.85500 1.16389 8.75000 GG TT 1 0.79400 1.37822 8.14000 FF -- 1 0.80800 1.17728 8.28000 SQ -- 1 0.63700 1.52117 6.57000 *