% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1lmw.ent 1lmwab { CHAIN A CHAIN B -0.03225 0.25221 -0.96711 1.33401 0.64039 0.74811 0.17374 -162.97064 0.76733 -0.61374 -0.18559 22.17525 } /disk3/pdb/pdb1ton.ent 1ton { ALL -0.73193 0.55014 -0.40202 31.12064 0.38947 -0.14642 -0.90929 67.66969 -0.55910 -0.82214 -0.10710 27.48403 } % Reading block file... Blocfile read: Length: 267 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 267 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 262 % The alignment: >1lmwab (cluster A) sequence >1ton (cluster B) sequence >space >1lmwab_dssp (cluster A) secondary structure from DSSP >1ton_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * C - G - Q - K - T - L - R - P - II -- 1 0.92100 0.75578 9.41000 IV -B 1 0.78700 1.04066 8.07000 GG SS 1 0.57800 1.56597 5.98000 GG -- 1 0.59400 1.60587 6.14000 EY -E 1 0.81100 1.07902 8.31000 FK -E 1 0.86800 0.91005 8.88000 TC -- TE -- IK TT EN TT 0 0.40300 1.24482 4.23000 NS TS 1 0.79500 1.12729 8.15000 QQ S- 1 0.93000 0.81595 9.50000 PP TT 1 0.93300 0.83585 9.53000 WW TT 1 0.94200 0.65086 9.62000 FQ -E 1 0.94600 0.57816 9.66000 AV EE 1 0.93000 0.83892 9.50000 AA EE 1 0.92300 0.86983 9.43000 IV EE 1 0.89100 1.06046 9.11000 YI EE 1 0.85500 1.25592 8.75000 R E R E H - R S G S G S S - VN ES 0 0.00000 2.62545 0.08000 TE ES 0 0.12000 2.47714 1.40000 YY ES 0 0.16800 2.31819 1.88000 VL -E 1 0.46100 1.31177 4.81000 CC -E 1 0.88200 0.53365 9.02000 GG -E 1 0.93300 0.73004 9.53000 GG -E 1 0.93200 0.77651 9.52000 SV -E 1 0.94300 0.78201 9.63000 LL BE 1 0.94300 0.76224 9.63000 MI -E 1 0.92800 0.86061 9.48000 SD SE 1 0.91400 0.99899 9.34000 PP ST 1 0.93100 0.89449 9.51000 CS ST 1 0.94200 0.69511 9.62000 WW EE 1 0.94900 0.59817 9.69000 VV EE 1 0.94200 0.74179 9.62000 II EE 1 0.93200 0.81038 9.52000 ST EE 1 0.94600 0.45794 9.66000 AA -- 1 0.93800 0.72999 9.58000 TA GG 1 0.93400 0.42719 9.54000 HH GG 1 0.89500 0.92558 9.15000 CC GG F S I S D S Y - P - KY -- KS S- EN TS 0 0.08300 2.41532 1.03000 DN T- 0 0.29200 1.69376 3.12000 YY E- 1 0.80100 1.20635 8.21000 IQ EE 1 0.88400 1.06552 9.04000 VV EE 1 0.92400 0.85859 9.44000 YL EE 1 0.92000 0.97246 9.40000 LL EE 1 0.92500 0.93259 9.45000 GG SS 1 0.93800 0.67411 9.58000 RR -- 1 0.91800 0.96578 9.38000 SN -S 1 0.92700 0.94872 9.47000 RN BB 1 0.89100 0.91737 9.11000 LL TT 1 0.74100 1.27278 7.61000 NF TT 1 0.68400 1.52902 7.04000 SK SS 1 0.71000 1.64070 7.30000 ND -- 1 0.58600 1.75958 6.06000 TE -- 1 0.68600 1.19733 7.06000 QP ST 1 0.67700 1.40669 6.97000 GF ST 1 0.68300 1.56164 7.03000 EA -- 1 0.84600 1.20710 8.66000 MQ EE 1 0.89200 1.14941 9.12000 KR EE 1 0.90200 1.05975 9.22000 FR EE 1 0.92500 0.86248 9.45000 EL E- 1 0.86500 1.06036 8.85000 VV EE 1 0.88600 0.62566 9.06000 ER EE 1 0.89000 1.05931 9.10000 NQ EE 1 0.86700 1.09212 8.87000 LS EE 1 0.84800 1.15207 8.68000 IF EE 1 0.84400 1.28039 8.64000 LR -E 1 0.86500 1.12676 8.85000 HH -- 1 0.86800 1.18120 8.88000 KP TT 1 0.87100 1.24146 8.91000 DD TT 1 0.88300 1.06088 9.03000 YY -- 1 0.84700 0.56284 8.67000 SI E- AP E- L - DP E- TV S- LH S- 0 0.00700 2.82493 0.27000 AD -- 0 0.18800 1.93310 2.08000 HH ES 1 0.64600 0.98018 6.66000 HS ET 1 0.85900 1.18069 8.79000 NN ST 1 0.91800 0.71811 9.38000 DD -- 1 0.94500 0.72143 9.65000 IL -- 1 0.94800 0.72905 9.68000 AM EE 1 0.94500 0.78481 9.65000 LL EE 1 0.94500 0.79662 9.65000 LL EE 1 0.93900 0.75001 9.59000 KH EE 1 0.92000 0.95314 9.40000 IL EE 1 0.83500 0.91586 8.55000 R E S E K T E T GS SS 0 0.00000 2.71455 0.04000 RE -S 0 0.24600 2.00380 2.66000 CP -- 1 0.64700 1.12509 6.67000 AA -- 1 0.81200 1.33811 8.32000 QD -- 1 0.76100 1.47524 7.81000 PI -- 1 0.86300 0.99958 8.83000 ST -- 1 0.83400 1.27635 8.54000 RG SS 1 0.87300 1.11630 8.93000 TG SS 1 0.92000 0.85635 9.40000 IV S- 1 0.93700 0.76719 9.57000 QK -- 1 0.94900 0.71959 9.69000 TV -- 1 0.94400 0.79279 9.64000 II -- 1 0.93900 0.81054 9.59000 CD B- 1 0.91200 0.99936 9.32000 LL -- 1 0.93700 0.69955 9.57000 PP -- 1 0.91100 0.82824 9.31000 S - M S YT S- 0 0.00000 2.70246 0.04000 NK -S 0 0.27800 1.59395 2.98000 DE -- 1 0.69500 1.44893 7.15000 PP -- 1 0.62300 1.61061 6.43000 QK -- 1 0.74500 1.30568 7.65000 FV TT 1 0.85700 1.15771 8.77000 GG TT 1 0.88900 0.99008 9.09000 TS -- 1 0.93600 0.64935 9.56000 ST EE 1 0.93900 0.78580 9.59000 CC EE 1 0.93500 0.82483 9.55000 EL EE 1 0.94700 0.55492 9.67000 IA EE 1 0.94500 0.69449 9.65000 TS EE 1 0.94900 0.63999 9.69000 GG EE 1 0.95000 0.63298 9.70000 FW SS 1 0.92100 0.55512 9.41000 GG -S 1 0.83400 1.13010 8.54000 KS -- 1 0.90600 0.42958 9.26000 ET SS 1 0.91000 0.84306 9.30000 NN -S 1 0.82200 1.15103 8.42000 SP SS 1 0.57500 1.63833 5.95000 TS SS 1 0.49100 1.46678 5.11000 DE -S 0 0.38800 1.72442 4.08000 YM -- 1 0.54400 1.63678 5.64000 LV S- 1 0.64200 1.51026 6.62000 YV -- 1 0.77300 0.70506 7.93000 PS -- 1 0.84200 1.23607 8.62000 EH SS 1 0.87300 1.23733 8.93000 QD BB 1 0.90200 1.05010 9.22000 LL -- 1 0.90900 0.96025 9.29000 KQ EE 1 0.94000 0.59312 9.60000 MC EE 1 0.94600 0.55980 9.66000 TV EE 1 0.92500 0.81378 9.45000 VN EE 1 0.94400 0.60955 9.64000 VI EE 1 0.93900 0.69135 9.59000 KH EE 1 0.91200 0.91662 9.32000 LL EE 1 0.87400 0.98313 8.94000 IL EE 1 0.87600 0.97011 8.96000 SS -- 1 0.78300 1.10131 8.03000 HN HG 1 0.56300 1.77771 5.83000 RE HG 1 0.53100 1.97881 5.51000 EK HG 1 0.54800 1.94486 5.68000 C H Q T Q S P T H T Y T YC T- 0 0.38500 2.08545 4.05000 GI GG 1 0.46300 1.91089 4.83000 SE GG 0 0.20800 2.38991 2.28000 ET GG 1 0.45200 2.03561 4.72000 Y G K S D T N T VV -G 0 0.01300 2.45430 0.33000 TT -G 0 0.31200 1.37107 3.32000 TD TG 1 0.74200 1.33353 7.62000 KV TG 1 0.87700 0.70820 8.97000 MM EE 1 0.93100 0.76604 9.51000 LL EE 1 0.94700 0.68816 9.67000 CC EE 1 0.94900 0.70408 9.69000 AA EE 1 0.92500 0.80056 9.45000 AG EE 1 0.77000 1.15313 7.90000 DE -- 1 0.56800 1.43881 5.88000 PM ST 0 0.18400 2.11991 2.04000 QE ST 1 0.48800 0.77734 5.08000 WG S- 1 0.76800 1.34237 7.88000 KG SS 1 0.68200 1.53997 7.02000 TK -- 1 0.85100 0.97951 8.71000 DD -B 1 0.91800 0.99931 9.38000 ST -- 1 0.89700 0.98967 9.17000 CC -- 1 0.91900 0.79069 9.39000 QA TT 1 0.92500 0.87823 9.45000 GG TT 1 0.94000 0.66643 9.60000 DD -- 1 0.94600 0.73023 9.66000 SS -T 1 0.94800 0.67614 9.68000 GG ST 1 0.95300 0.57262 9.73000 GG -- 1 0.94400 0.72186 9.64000 PP EE 1 0.95100 0.53444 9.71000 LL EE 1 0.94200 0.57888 9.62000 VI EE 1 0.84500 0.78468 8.65000 CC EE S E L E Q T G T RD ET MG ET 0 0.20500 1.75012 2.25000 TV EE 1 0.69000 1.58106 7.10000 LL EE 1 0.76600 1.26464 7.86000 TQ EE 1 0.90000 0.58070 9.20000 GG EE 1 0.94300 0.63457 9.63000 II EE 1 0.92900 0.87440 9.49000 VT EE 1 0.94000 0.85388 9.60000 SS E- 1 0.66000 0.80728 6.80000 WG E- 0 0.34100 1.91905 3.61000 GG -- 0 0.21700 2.38499 2.37000 A - RT SS 0 0.02900 2.67094 0.49000 GP SS 0 0.27400 1.67172 2.94000 CC S- 1 0.78600 0.93879 8.06000 AA SS 1 0.93200 0.88513 9.52000 LK B- 1 0.90500 1.01056 9.25000 KP TT 1 0.87900 1.11256 8.99000 DK TT 1 0.90300 0.99617 9.23000 KT B- 1 0.94000 0.69128 9.60000 PP -- 1 0.93200 0.64013 9.52000 GA -E 1 0.89900 1.03016 9.19000 VI EE 1 0.92200 0.92896 9.42000 YY EE 1 0.94100 0.56676 9.61000 TA EE 1 0.94500 0.70145 9.65000 RK -E 1 0.93900 0.71644 9.59000 VL GG 1 0.93300 0.67394 9.53000 SI GG 1 0.91000 0.97481 9.30000 HK GG 1 0.92300 0.89397 9.43000 FF GG 1 0.92600 0.63985 9.46000 LT HH 1 0.89200 1.02919 9.12000 PS HH 1 0.92200 0.87500 9.42000 WW HH 1 0.93900 0.71105 9.59000 II HH 1 0.95300 0.50261 9.73000 RK HH 1 0.94400 0.68576 9.64000 SK HH 1 0.92100 0.92497 9.41000 HV HH 1 0.93700 0.70423 9.57000 TM HH 1 0.89500 0.38157 9.15000 KK SH 1 0.80400 1.19644 8.24000 EE -H 1 0.44400 1.19750 4.64000 N - *