% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1llp.ent 1llp { ALL 0.25733 -0.19851 -0.94570 43.01697 0.92085 0.34715 0.17767 -41.65360 0.29304 -0.91653 0.27218 262.94513 } /disk3/pdb/pdb1aru.ent 1aru { ALL -0.14092 0.30131 0.94302 -9.81544 -0.42949 -0.87686 0.21599 67.71680 0.89203 -0.37461 0.25295 182.06744 } % Reading block file... Blocfile read: Length: 343 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 343 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 343 % The alignment: >1llp (cluster A) sequence >1aru (cluster B) sequence >space >1llp_dssp (cluster A) secondary structure from DSSP >1aru_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * S - AV -- 1 0.89800 1.06895 9.18000 TT BB 1 0.92500 0.81959 9.45000 CC -- 1 0.94100 0.84008 9.61000 AP TT 1 0.93600 0.89702 9.56000 NG TT 1 0.93200 0.91815 9.52000 GG SS 1 0.92300 0.95811 9.43000 KQ -- 1 0.93900 0.76512 9.59000 TS BB 1 0.95100 0.56276 9.71000 VT -- 1 0.94700 0.68407 9.67000 GS SS 1 0.94500 0.72427 9.65000 DN S- 1 0.91600 0.78863 9.36000 AS GG 1 0.82600 1.20324 8.46000 SQ GG 1 0.85700 1.01012 8.77000 CC GG 1 0.91400 0.36420 9.34000 CC GH 1 0.91700 0.86672 9.37000 AV HH 1 0.93200 0.79480 9.52000 WW HH 1 0.94800 0.53919 9.68000 FF HH 1 0.94900 0.63081 9.69000 DD HH 1 0.94900 0.68477 9.69000 VV HH 1 0.95500 0.50135 9.75000 LL HH 1 0.95300 0.52088 9.73000 DD HH 1 0.94600 0.70898 9.66000 DD HH 1 0.94600 0.74586 9.66000 IL HH 1 0.95200 0.62476 9.72000 QQ HH 1 0.94500 0.66806 9.65000 AT HH 1 0.91800 0.91884 9.38000 NN HT 1 0.93600 0.56234 9.56000 MF TT 1 0.92400 0.90021 9.44000 FY ST 1 0.91900 0.90941 9.39000 HQ TT 1 0.85100 1.20971 8.71000 GG TT 1 0.89400 1.03796 9.14000 GS TT 1 0.91900 1.01244 9.39000 QK -- 1 0.89200 1.15931 9.12000 CC -- 1 0.91300 1.04348 9.33000 GE SS 1 0.92400 0.91030 9.44000 AS HH 1 0.93000 0.84420 9.50000 EP HH 1 0.92800 0.79619 9.48000 AV HH 1 0.90600 0.98838 9.26000 HR HH 1 0.91300 1.02976 9.33000 EK HH 1 0.92300 0.97500 9.43000 SI HH 1 0.91400 0.99597 9.34000 IL HH 1 0.87700 1.19683 8.97000 RR HH 1 0.87100 1.19403 8.91000 LI HH 1 0.92000 0.88193 9.40000 VV HH 1 0.94200 0.74338 9.62000 FF HH 1 0.95200 0.49831 9.72000 HH HH 1 0.95200 0.62833 9.72000 DD HH 1 0.95400 0.54845 9.74000 SA HH 1 0.95500 0.40703 9.75000 II TT 1 0.94200 0.64402 9.62000 AG -- 1 0.93400 0.69239 9.54000 IF -- 1 0.94100 0.71416 9.61000 SS -- 1 0.93700 0.77541 9.57000 PP HH 1 0.90400 1.04040 9.24000 AA HH 1 0.93300 0.84107 9.53000 ML HH 1 0.92900 0.88638 9.49000 ET HH 1 0.89200 1.12996 9.12000 AA HH 1 0.88300 1.18865 9.03000 KA TT 1 0.88300 1.19230 9.03000 GG TT 1 0.90100 1.12411 9.21000 KQ SS 1 0.90200 1.12265 9.22000 FF -- 1 0.92000 0.98532 9.40000 GG -- 1 0.89500 1.11882 9.15000 GG -- 1 0.92300 0.88859 9.43000 GG -- 1 0.94600 0.64881 9.66000 GG SS 1 0.95500 0.54750 9.75000 AA SS 1 0.95700 0.43417 9.77000 DD SS 1 0.95700 0.47451 9.77000 GG SS 1 0.95500 0.52983 9.75000 SS HH 1 0.95600 0.45452 9.76000 II HH 1 0.95200 0.50833 9.72000 MI HH 1 0.94700 0.62333 9.67000 IA HH 1 0.94400 0.78235 9.64000 FH TT 1 0.94700 0.71868 9.67000 DS HH 1 0.93400 0.70326 9.54000 TN HH 1 0.89400 1.06164 9.14000 II HH 1 0.93400 0.78100 9.54000 EE HH 1 0.94100 0.59853 9.61000 TL TT 1 0.91300 0.92511 9.33000 AA TT 1 0.90900 0.92566 9.29000 FF SS 1 0.94200 0.44453 9.62000 HP GG 1 0.91000 0.33626 9.30000 PA GG 1 0.85600 1.10496 8.76000 NN GG 1 0.89100 1.14296 9.11000 IG TT 1 0.87800 1.22019 8.98000 GG TT 1 0.89600 1.11923 9.16000 LL H- 1 0.85100 1.28568 8.71000 DT HH 1 0.82700 1.35295 8.47000 ED HH 1 0.77700 1.52153 7.97000 VT HH 1 0.77500 1.39648 7.95000 VI HH 1 0.82200 0.76105 8.42000 AE HH 1 0.78000 1.35159 8.00000 MA HH 1 0.72200 1.54284 7.42000 QL HH 1 0.82600 1.22236 8.46000 KR HH 1 0.90000 1.10743 9.20000 PA HH 1 0.92900 0.91845 9.49000 FV HH 1 0.93700 0.87323 9.57000 VG HH 1 0.93100 0.92571 9.51000 QI HH 1 0.92100 1.00672 9.41000 KN HH 1 0.92800 0.94393 9.48000 HH HH 1 0.93100 0.89881 9.51000 GG TT 1 0.93000 0.88853 9.50000 VV -- 1 0.94700 0.69518 9.67000 TS -- 1 0.95000 0.71588 9.70000 PF HH 1 0.94800 0.74893 9.68000 GG HH 1 0.95000 0.71437 9.70000 DD HH 1 0.95100 0.66204 9.71000 FL HH 1 0.94700 0.66385 9.67000 II HH 1 0.95000 0.64147 9.70000 AQ HH 1 0.95200 0.67128 9.72000 FF HH 1 0.95200 0.63166 9.72000 AA HH 1 0.95000 0.63185 9.70000 GT HH 1 0.94000 0.80108 9.60000 AA HH 1 0.93800 0.84684 9.58000 VV HH 1 0.94200 0.78857 9.62000 AG HH 1 0.92800 0.92458 9.48000 LM HH 1 0.92600 0.92966 9.46000 SS HH 1 0.91800 1.00050 9.38000 NN TT 1 0.92300 0.99578 9.43000 CC SS 1 0.92300 0.98399 9.43000 PP TT 1 0.92900 0.93114 9.49000 GG TT 1 0.93300 0.92397 9.53000 AS -- 1 0.93600 0.88446 9.56000 PP -- 1 0.91200 0.94884 9.32000 QR -- 1 0.81100 1.18339 8.31000 ML -- 1 0.82600 1.09386 8.46000 NE -- 1 0.89800 0.96817 9.18000 FF -- 1 0.93600 0.69431 9.56000 FL EE 1 0.94100 0.54333 9.61000 TT EE 1 0.91500 0.83714 9.35000 GG -- 1 0.86400 1.13499 8.84000 RR -- 1 0.88000 1.10419 9.00000 KS -- 1 0.86500 0.96773 8.85000 PN -S 1 0.58100 1.39365 6.01000 AS -- 0 0.39000 1.95430 4.10000 TS S- 1 0.59300 1.60390 6.13000 QQ S- 1 0.74400 1.09371 7.64000 PP -- 1 0.92400 0.72026 9.44000 AS -- 1 0.92400 0.69719 9.44000 PP -- 1 0.86900 1.07020 8.89000 DP SS 1 0.89100 0.90567 9.11000 GS SS 1 0.92200 0.72366 9.42000 LL -- 1 0.95100 0.35729 9.71000 VI SS 1 0.94700 0.55306 9.67000 PP -- 1 0.94200 0.69042 9.62000 EG -- 1 0.95300 0.57049 9.73000 PP TT 1 0.95400 0.42922 9.74000 FG TT 1 0.94900 0.61188 9.69000 HN SS 1 0.95000 0.58518 9.70000 TT -- 1 0.94600 0.75775 9.66000 VV HH 1 0.94900 0.73072 9.69000 DT HH 1 0.95000 0.67148 9.70000 QA HH 1 0.94200 0.81394 9.62000 II HH 1 0.94400 0.81528 9.64000 IL HH 1 0.94400 0.81061 9.64000 AD HH 1 0.94400 0.74679 9.64000 RR HH 1 0.93000 0.67431 9.50000 VM HH 1 0.89700 1.05199 9.17000 NG HH 1 0.90900 1.05890 9.29000 DD HH 1 0.92100 0.87771 9.41000 A H GA HH 1 0.60000 1.74645 6.20000 EG -T 1 0.75500 1.37075 7.75000 FF -- 1 0.85300 1.02231 8.73000 DS -- 1 0.93200 0.62074 9.52000 EP HH 1 0.95200 0.60930 9.72000 LD HH 1 0.95000 0.61032 9.70000 EE HH 1 0.95100 0.61757 9.71000 LV HH 1 0.94900 0.67562 9.69000 VV HH 1 0.95500 0.45740 9.75000 WD HH 1 0.95800 0.43557 9.78000 ML HH 1 0.95600 0.42771 9.76000 LL GG 1 0.95200 0.59577 9.72000 SA GG 1 0.95000 0.66135 9.70000 AA GG 1 0.95200 0.59825 9.72000 HH GG 1 0.95500 0.56333 9.75000 SS GG 1 0.94800 0.65498 9.68000 VL GG 1 0.92800 0.80110 9.48000 AA -- 1 0.91300 0.99285 9.33000 AS EE 1 0.92400 0.93442 9.44000 VQ EE 1 0.93900 0.74334 9.59000 NE SS 1 0.93800 0.83098 9.58000 DG SS 1 0.94600 0.69190 9.66000 VL SS 1 0.95400 0.58060 9.74000 DN S- 1 0.75700 0.45135 7.77000 PS TG 1 0.50800 1.63219 5.28000 TA TG 1 0.72400 1.10042 7.44000 VI -G 1 0.62900 1.57100 6.49000 QF ST 1 0.76300 1.23535 7.83000 GR -T 1 0.90700 0.75412 9.27000 LS EE 1 0.91700 1.00731 9.37000 PP EE 1 0.92900 0.94354 9.49000 FL SS 1 0.93400 0.86660 9.54000 DD SS 1 0.94800 0.65320 9.68000 SS SS 1 0.95100 0.56577 9.71000 TT -- 1 0.94700 0.68693 9.67000 PP TT 1 0.94400 0.78310 9.64000 GQ TT 1 0.94700 0.71932 9.67000 IV SS 1 0.95000 0.69248 9.70000 FF -- 1 0.95100 0.67824 9.71000 DD SS 1 0.95000 0.62310 9.70000 ST ST 1 0.94700 0.65185 9.67000 QQ HH 1 0.95500 0.45173 9.75000 FF HH 1 0.95600 0.49032 9.76000 FY HH 1 0.95500 0.47717 9.75000 VI HH 1 0.95700 0.42802 9.77000 EE HH 1 0.95700 0.42361 9.77000 TT TH 1 0.95800 0.28076 9.78000 QL TT 1 0.95300 0.46651 9.73000 FL BB 1 0.94500 0.60190 9.65000 RK -- 1 0.94200 0.74018 9.62000 GG -- 1 0.93400 0.71832 9.54000 TT -- 1 0.89300 1.04562 9.13000 LT BB 1 0.80600 1.27993 8.26000 FQ -- 1 0.77500 1.36706 7.95000 PP S- 1 0.88000 1.14969 9.00000 GG SS 1 0.71100 1.09469 7.31000 SP -S 0 0.39000 1.90493 4.10000 GS SS 0 0.39400 1.72775 4.14000 GL -- 0 0.38800 1.85745 4.08000 NG -- 1 0.74700 1.47690 7.67000 QF TT 1 0.68600 1.49218 7.06000 GA TT 1 0.76800 1.20889 7.88000 EE EE 1 0.89100 1.13005 9.11000 VE EE 1 0.90600 1.00498 9.26000 EL -- 1 0.90500 1.05059 9.25000 SS BB 1 0.90700 0.92994 9.27000 GP SS 1 0.85400 0.81848 8.74000 MF SS 1 0.79000 1.27155 8.10000 AP TT 1 0.90600 0.98057 9.26000 GG TT 1 0.93600 0.84957 9.56000 EE -- 1 0.93600 0.85794 9.56000 IF -- 1 0.94000 0.82904 9.60000 RR EE 1 0.93700 0.87571 9.57000 IM EE 1 0.93700 0.88748 9.57000 QR HH 1 0.93700 0.85797 9.57000 TS HH 1 0.93700 0.84682 9.57000 DD HH 1 0.94400 0.74482 9.64000 HA HH 1 0.94800 0.58851 9.68000 TL HH 1 0.94800 0.67825 9.68000 LL HH 1 0.94900 0.71565 9.69000 AA TH 1 0.95000 0.66511 9.70000 RR TH 1 0.95200 0.58628 9.72000 DD SS 1 0.94900 0.61092 9.69000 SS TT 1 0.94600 0.71721 9.66000 RR TT 1 0.94300 0.80998 9.63000 TT TT 1 0.94000 0.76719 9.60000 AA HH 1 0.94400 0.66838 9.64000 CC HH 1 0.94100 0.78683 9.61000 ER HH 1 0.95000 0.53519 9.70000 WW HH 1 0.94800 0.28756 9.68000 QQ HH 1 0.93300 0.76592 9.53000 SS TH 1 0.93200 0.46425 9.52000 FM TT 1 0.89900 0.99572 9.19000 VT TS 1 0.89400 1.01222 9.14000 GS TS 1 0.85600 1.12703 8.76000 NS -- 1 0.83300 1.16415 8.53000 QN HH 1 0.79700 1.33433 8.17000 SE HH 1 0.75500 1.43785 7.75000 KV HH 1 0.81700 1.16134 8.37000 LM HH 1 0.90200 0.62616 9.22000 VG HH 1 0.89700 1.03016 9.17000 DQ HH 1 0.91700 0.89665 9.37000 DR HH 1 0.92100 0.80756 9.41000 FY HH 1 0.93400 0.81376 9.54000 QR HH 1 0.93600 0.84956 9.56000 FA HH 1 0.94300 0.74818 9.63000 IA HH 1 0.94300 0.79661 9.63000 FM HH 1 0.92600 0.88463 9.46000 LA HH 1 0.91400 0.99099 9.34000 AK HH 1 0.93200 0.92448 9.52000 LM HH 1 0.93400 0.88164 9.54000 TS HH 1 0.91200 0.91927 9.32000 QV TT 1 0.92800 0.70471 9.48000 LL TT 1 0.94800 0.65976 9.68000 GG TT 1 0.95200 0.50494 9.72000 QF SS 1 0.94200 0.75315 9.62000 DD -- 1 0.93900 0.79383 9.59000 PR GG 1 0.94600 0.65161 9.66000 NN GG 1 0.93200 0.82091 9.52000 AA GG 1 0.93800 0.66504 9.58000 ML SS 1 0.95000 0.53187 9.70000 TT EE 1 0.95200 0.61606 9.72000 DD EE 1 0.95300 0.53673 9.73000 CC -- 1 0.94300 0.75441 9.63000 SS GG 1 0.95200 0.59688 9.72000 DD GG 1 0.94900 0.67934 9.69000 VV GG 1 0.95300 0.60628 9.73000 II SS 1 0.95300 0.62903 9.73000 PP -- 1 0.91500 0.74563 9.35000 LS -- 1 0.83100 1.08746 8.51000 SA -- 1 0.72700 1.50000 7.47000 KV -- 1 0.77400 1.29889 7.94000 PS -- 1 0.88200 0.57475 9.02000 IN -- P S G S N S GN S- PA -- FA S- 1 0.44200 1.44056 4.62000 SP S- 1 0.85100 0.83123 8.71000 FV -E 1 0.92100 0.51195 9.41000 FI BE 1 0.89500 1.03126 9.15000 PP -- 1 0.88800 1.08474 9.08000 PG TT 1 0.58800 1.30076 6.08000 GG TT 0 0.42500 1.77310 4.45000 KL -- 1 0.73900 1.42111 7.59000 ST -- 1 0.79800 1.36211 8.18000 HV GG 1 0.84100 1.27539 8.61000 SD GG 1 0.84400 1.31464 8.64000 DD GG 1 0.84600 1.12070 8.66000 II BB 1 0.89400 0.80071 9.14000 EE -- 1 0.93600 0.78528 9.56000 QV -- 1 0.92200 0.90562 9.42000 AS -- 1 0.93800 0.65284 9.58000 CC -- 1 0.92700 0.85952 9.47000 AP ST 1 0.93400 0.69518 9.54000 ES ST 1 0.88000 1.01803 9.00000 TE SS 1 0.81500 1.19616 8.35000 PP -- 1 0.77200 1.43764 7.92000 FF -- 1 0.82100 1.28150 8.41000 PP -- 1 0.77500 1.40664 7.95000 SE -- 1 0.72000 1.59221 7.40000 LI -- 1 0.81600 1.36956 8.36000 VA -E 1 0.79700 1.32761 8.17000 TT BE 1 0.74300 1.35972 7.63000 LA -- 1 0.75300 1.46169 7.73000 PS S- 1 0.67900 1.66690 6.99000 GG SS 1 0.74300 1.52836 7.63000 PP SS 1 0.82200 1.40218 8.42000 AL -- 1 0.78700 1.46638 8.07000 TP -- 1 0.73000 1.44951 7.50000 SS -- 1 0.84300 0.94997 8.63000 VL -- 1 0.90500 1.07028 9.25000 AA -- 1 0.89600 1.04924 9.16000 RP -- 1 0.82600 0.71615 8.46000 IA -- 1 0.45900 1.44176 4.79000 P - P - H - K - *