% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1ifc.ent 1ifc { ALL 0.49541 -0.84668 -0.19424 46.73891 0.48815 0.45627 -0.74397 66.96869 0.71852 0.27378 0.63937 21.28066 } /disk3/pdb/pdb1pmp.ent 1pmpa { CHAIN A 0.99997 -0.00337 0.00650 0.00923 0.00338 0.99999 -0.00244 -0.02292 -0.00649 0.00246 0.99998 0.15685 } % Reading block file... Blocfile read: Length: 132 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 132 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 132 % The alignment: >1ifc (cluster A) sequence >1pmpa (cluster B) sequence >space >1ifc_dssp (cluster A) secondary structure from DSSP >1pmpa_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * S - N - AK -T 1 0.93200 0.91224 9.52000 FF -T 1 0.92500 0.79512 9.45000 DL -- 1 0.87000 1.14680 8.90000 GG EE 1 0.92000 0.82496 9.40000 TT EE 1 0.94600 0.52544 9.66000 WW EE 1 0.94200 0.63770 9.62000 KK EE 1 0.92500 0.92230 9.45000 VL EE 1 0.92600 0.92089 9.46000 DV EE 1 0.90400 1.06705 9.24000 RS EE 1 0.83900 1.21934 8.59000 NS E- 1 0.89300 0.85929 9.13000 EE E- 1 0.92600 0.93161 9.46000 NN SS 1 0.94100 0.76959 9.61000 YF HH 1 0.95000 0.68728 9.70000 ED HH 1 0.94000 0.58297 9.60000 KE HH 1 0.89500 0.95257 9.15000 FY HH 1 0.90700 0.92480 9.27000 MM HH 1 0.93200 0.90482 9.52000 EK HH 1 0.93400 0.91941 9.54000 KA HT 1 0.92900 0.95960 9.49000 ML HT 1 0.92000 1.00931 9.40000 GG TT 1 0.90700 1.07563 9.27000 IV -- 1 0.87100 1.18023 8.91000 NG -- 1 0.78700 1.37775 8.07000 VL HH 1 0.71300 1.55979 7.33000 VA HH 1 0.58200 1.80296 6.02000 KT HH 1 0.69500 1.48437 7.15000 RR HH 1 0.81100 1.18083 8.31000 KK HH 1 0.75300 1.40502 7.73000 LL HH 1 0.85200 0.94745 8.72000 GG HH 1 0.89000 0.45907 9.10000 AN TH 1 0.83500 1.19875 8.55000 HL TT 1 0.76500 1.38187 7.85000 DA -- 1 0.71300 1.51975 7.33000 NK -- 1 0.66900 1.58938 6.89000 LP -- 1 0.83100 0.96940 8.51000 KR EE 1 0.92900 0.85393 9.49000 LV EE 1 0.92100 0.81068 9.41000 TI EE 1 0.92500 0.87752 9.45000 II EE 1 0.90600 0.91097 9.26000 TS EE 1 0.85400 1.04676 8.74000 QK EE 1 0.75200 1.33520 7.72000 EK EE 1 0.54100 1.81499 5.61000 GG TT 0 0.36000 2.17495 3.80000 ND TT 1 0.46900 1.95037 4.89000 KI EE 1 0.62000 1.53972 6.40000 FI EE 1 0.81100 0.85029 8.31000 TT EE 1 0.87700 1.03219 8.97000 VI EE 1 0.88100 1.15660 9.01000 KR EE 1 0.80100 1.37472 8.21000 ET EE 1 0.80200 1.33267 8.22000 SE EE 1 0.85800 0.95202 8.78000 SS -- 1 0.80900 1.19005 8.29000 NP SS 1 0.71400 1.55888 7.34000 FF SS 1 0.57000 1.66613 5.90000 RK -- 1 0.59200 1.52120 6.12000 NN EE 1 0.65700 1.61061 6.77000 IT EE 1 0.56300 1.85284 5.83000 DE EE 1 0.65700 1.57222 6.77000 VI EE 1 0.79700 1.14376 8.17000 VS EE 1 0.92800 0.74898 9.48000 FF EE 1 0.95100 0.63769 9.71000 EK E- 1 0.95300 0.57680 9.73000 LL TS 1 0.95500 0.53075 9.75000 GG TS 1 0.94900 0.67633 9.69000 VQ -S 1 0.94200 0.79913 9.62000 DE -E 1 0.94600 0.74668 9.66000 FF EE 1 0.92800 0.79974 9.48000 AE EE 1 0.89100 1.09647 9.11000 YE EE 1 0.86400 1.14521 8.84000 ST EE 1 0.77700 1.46004 7.97000 LT -- 1 0.78400 1.41189 8.04000 AA TT 1 0.86300 1.08029 8.83000 DD TT 1 0.84100 1.26838 8.61000 GN SS 1 0.86700 1.09802 8.87000 TR -- 1 0.83300 1.33686 8.53000 EK EE 1 0.82300 1.40455 8.43000 LT EE 1 0.84900 1.24272 8.69000 TK EE 1 0.86300 1.02584 8.83000 GS EE 1 0.75300 1.36559 7.73000 TT EE 1 0.88000 0.65129 9.00000 WV EE 1 0.94400 0.61956 9.64000 TT EE 1 0.92400 0.89865 9.44000 ML EE 1 0.93800 0.77633 9.58000 EA EE 1 0.91500 0.73326 9.35000 GR TT 1 0.85800 1.17041 8.78000 NG TT 1 0.92300 0.91246 9.43000 KS EE 1 0.93300 0.81734 9.53000 LL EE 1 0.94100 0.43587 9.61000 VN EE 1 0.93300 0.79841 9.53000 GQ EE 1 0.90600 0.83626 9.26000 KV EE 1 0.84600 1.25082 8.66000 FQ EE 1 0.81300 1.29245 8.33000 KK EE 1 0.79800 0.79149 8.18000 R E V T DW TE NN TT 0 0.40800 1.70674 4.28000 GG -T 1 0.66900 1.36176 6.89000 KN -E 1 0.87100 0.87859 8.91000 EE EE 1 0.89300 1.05225 9.13000 LT EE 1 0.91700 0.71566 9.37000 IT EE 1 0.92600 0.88466 9.46000 AI EE 1 0.93000 0.86690 9.50000 VK EE 1 0.94000 0.59968 9.60000 RR EE 1 0.93600 0.75263 9.56000 EK EE 1 0.92600 0.91206 9.46000 IL EE 1 0.92200 0.96352 9.42000 SV EE 1 0.92000 0.90994 9.40000 GD TT 1 0.85300 0.87120 8.73000 NG TT 1 0.78200 1.28874 8.02000 EK EE 1 0.87700 1.11211 8.97000 LM EE 1 0.91300 0.93900 9.33000 IV EE 1 0.90800 1.06065 9.28000 QV EE 1 0.91800 1.00570 9.38000 TE EE 1 0.90700 0.95071 9.27000 YC EE 1 0.89900 1.00388 9.19000 TK EE 1 0.93300 0.87120 9.53000 YM E- 1 0.89300 0.85868 9.13000 EK TS 1 0.80000 1.25542 8.20000 GD TS 1 0.85000 1.11595 8.70000 VV E- 1 0.92200 0.78388 9.42000 EV EE 1 0.93600 0.85022 9.56000 AC EE 1 0.88700 1.00063 9.07000 KT EE 1 0.82100 1.33654 8.41000 RR EE 1 0.86200 1.27574 8.82000 II EE 1 0.88600 1.12705 9.06000 FY EE 1 0.90600 0.95193 9.26000 KE EE 1 0.90000 1.03033 9.20000 KK EE 1 0.91900 0.98726 9.39000 *