% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1hxn.ent 1hxn { ALL 0.47314 -0.83373 -0.28464 86.87457 -0.35269 0.11684 -0.92843 144.85617 0.80731 0.53968 -0.23877 2.24194 } /disk3/pdb/pdb1fbl.ent 1fbl.1 { _ 272 _ to _ 466 _ 1.00000 0.00000 -0.00001 0.00008 0.00000 1.00000 -0.00002 0.00100 0.00001 0.00002 1.00000 -0.00104 } % Reading block file... Blocfile read: Length: 220 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 220 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 220 % The alignment: >1hxn (cluster A) sequence >1fbl.1 (cluster B) sequence >space >1hxn_dssp (cluster A) secondary structure from DSSP >1fbl.1_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * P - Q - ET -- SP G- 0 0.00000 2.45505 0.00000 TQ G- 0 0.31000 1.23658 3.30000 RV GT 1 0.85000 1.21851 8.70000 CC -T 1 0.78000 1.46413 8.00000 DD T- 1 0.71500 1.50519 7.35000 PS TT 1 0.47400 1.91068 4.94000 DK -T 1 0.52600 1.77580 5.46000 LL -- 1 0.79900 1.19123 8.19000 VT -- 1 0.83500 1.22739 8.55000 LF -- 1 0.87900 0.63843 8.99000 SD ES 1 0.90300 0.98168 9.23000 AA EE 1 0.92800 0.95516 9.48000 MI EE 1 0.90900 1.05702 9.29000 VT EE 1 0.88800 0.89482 9.08000 ST -E 1 0.77000 1.25567 7.90000 D T NL TE 0 0.04000 2.48398 0.60000 HR ST 0 0.34400 1.65479 3.64000 GG -T 1 0.71000 1.16932 7.30000 AE EE 1 0.64400 1.59237 6.64000 TL EE 1 0.77900 1.24502 7.99000 YM EE 1 0.91300 0.89225 9.33000 VF EE 1 0.91900 1.00967 9.39000 FF EE 1 0.91500 1.03329 9.35000 SK TE 1 0.86200 1.15004 8.82000 GD TT 1 0.76900 1.46868 7.89000 SR ET 1 0.80300 1.38346 8.23000 HF EE 1 0.88100 0.97039 9.01000 YY EE 1 0.84300 1.05364 8.63000 WM EE 1 0.86300 1.01983 8.83000 RR SE 1 0.87300 1.02337 8.93000 LT SE 1 0.81100 1.13649 8.31000 DN S- 1 0.63300 1.57704 6.53000 TS SS 0 0.35200 2.04083 3.72000 NF SS 1 0.60600 1.39428 6.26000 RY -- 0 0.38400 1.55156 4.04000 DP TS 0 0.15600 2.31158 1.76000 GE TS 0 0.32000 2.01943 3.40000 WV -- 1 0.50100 1.56440 5.21000 HE -E 1 0.57800 1.69535 5.98000 SL EE 1 0.78600 1.00829 8.06000 WN EE 1 0.86900 1.19994 8.89000 PF GE 1 0.89900 1.03230 9.19000 II GH 1 0.89700 0.79138 9.17000 AS GH 1 0.81500 1.11887 8.35000 HV TH 1 0.70200 1.46995 7.22000 QF -H 1 0.73900 1.34338 7.59000 WW T- 1 0.79000 1.13645 8.10000 PP TS 1 0.75200 1.39718 7.72000 QQ SS 1 0.78600 1.36902 8.06000 GV -- 1 0.82100 1.10834 8.41000 PP S- 1 0.74700 1.14262 7.67000 SN SS 1 0.68700 1.32498 7.07000 TG -S 1 0.67400 1.47186 6.94000 VL S- 1 0.82800 1.08758 8.48000 DQ ES 1 0.91600 0.85710 9.36000 AA EE 1 0.92800 0.57094 9.48000 AA EE 1 0.90800 0.95519 9.28000 FY EE 1 0.91700 0.93801 9.37000 SE EE 1 0.90000 1.08519 9.20000 I E A T WD TT ER TT 0 0.18300 1.54578 2.03000 DD ET 1 0.74800 1.14273 7.68000 KE EE 1 0.88300 1.07560 9.03000 LV EE 1 0.92400 0.62299 9.44000 YR EE 1 0.94900 0.64005 9.69000 LF EE 1 0.94300 0.77885 9.63000 IF EE 1 0.93700 0.74874 9.57000 QK TE 1 0.90100 1.03118 9.21000 DG TT 1 0.87500 1.21868 8.95000 TN ET 1 0.88600 1.15653 9.06000 KK EE 1 0.89800 0.94838 9.18000 VY EE 1 0.92600 0.66612 9.46000 YW EE 1 0.94500 0.69634 9.65000 VA EE 1 0.95300 0.46560 9.73000 FV EE 1 0.94400 0.66910 9.64000 L - T S K S GR SE GG -T 0 0.20600 1.81425 2.26000 YQ ET 1 0.70300 1.37453 7.23000 TD EE 1 0.77300 1.14820 7.93000 LV -E 1 0.87700 0.65299 8.97000 VL T- 1 0.90900 0.90757 9.29000 NY TT 1 0.88600 1.01324 9.06000 GG -T 1 0.85300 0.98853 8.73000 YY -- 1 0.83700 1.08283 8.57000 PP E- 1 0.90500 0.67989 9.25000 KK EE 1 0.91400 0.72997 9.34000 RD HE 1 0.84400 1.17120 8.64000 LI HH 1 0.89500 0.96132 9.15000 EH HH 1 0.89500 0.94081 9.15000 KR HH 1 0.83200 1.25778 8.52000 ES HH 1 0.85500 1.22152 8.75000 LF -H 1 0.90500 0.93347 9.25000 GG -- 1 0.90100 1.01385 9.21000 S - P S PF S- 0 0.05600 2.61272 0.76000 VP -- 0 0.21100 2.40263 2.31000 IS -T 0 0.10700 2.37923 1.27000 ST -T 0 0.34000 1.31963 3.60000 LV S- 1 0.85300 0.89317 8.73000 EK -- 1 0.90100 1.02731 9.21000 AN -- 1 0.85400 1.21008 8.74000 VI -- 1 0.92100 0.85203 9.41000 DD E- 1 0.93300 0.81694 9.53000 AA EE 1 0.93400 0.76626 9.54000 AA EE 1 0.94800 0.61558 9.68000 FV -E 1 0.94400 0.32304 9.64000 VF -E 1 0.85000 0.82619 8.70000 CE TE 1 0.76700 1.36907 7.87000 PE TT 1 0.49100 1.46731 5.11000 GD -T 0 0.32100 1.96066 3.41000 ST -T 1 0.48700 1.94673 5.07000 SG ET 1 0.53400 1.69147 5.54000 RK EE 1 0.78300 0.92103 8.03000 LT EE 1 0.89600 1.01280 9.16000 HY EE 1 0.92500 0.40458 9.45000 IF EE 1 0.94200 0.68109 9.62000 MF EE 1 0.90600 0.58317 9.26000 AV TE 1 0.84400 1.13887 8.64000 GA TT 1 0.91000 0.95605 9.30000 RH ET 1 0.90300 1.10090 9.23000 RE EE 1 0.91300 1.06443 9.33000 LC EE 1 0.89400 1.02407 9.14000 WW EE 1 0.84000 1.18902 8.60000 WR EE 1 0.90100 0.76251 9.21000 LY EE 1 0.85500 1.14522 8.75000 DD GE 1 0.88300 0.97081 9.03000 LE GT 1 0.84000 1.23210 8.60000 KY GT 1 0.72700 1.53580 7.47000 S G GK GT 0 0.12300 2.38087 1.43000 AQ GT 0 0.24000 2.36356 2.60000 QS -E 0 0.14900 2.35725 1.69000 AM -E 0 0.30400 1.77067 3.24000 TD -- 0 0.29300 2.07430 3.13000 T S WG ES 0 0.11600 2.18748 1.36000 TY E- 0 0.37300 1.16947 3.93000 EP E- 1 0.56700 1.74928 5.87000 LK -E 1 0.54600 1.88115 5.66000 PM -E I H A H E H E H F S P T WG ST PI -S 0 0.23000 2.17374 2.50000 HG S- 1 0.51800 1.34764 5.38000 EN -S 1 0.86900 0.63772 8.89000 KK -- 1 0.90800 1.02578 9.28000 VV S- 1 0.91000 0.99899 9.30000 DD ES 1 0.93700 0.61043 9.57000 GA EE 1 0.95300 0.46757 9.73000 AV EE 1 0.94400 0.70510 9.64000 LF EE 1 0.92700 0.61306 9.47000 CQ EE 1 0.80900 1.03204 8.29000 MK SE 1 0.65300 1.61744 6.73000 E S K - P S L S G S P - N - S S C - S S T S S S GD -T PG ET 0 0.17100 0.75892 1.91000 NF EE 1 0.91600 0.97375 9.36000 LL EE 1 0.91400 0.94604 9.34000 YY EE 1 0.90300 0.93583 9.23000 LF EE 1 0.93500 0.54090 9.55000 IF EE 1 0.94500 0.69838 9.65000 HH TE 1 0.94700 0.77387 9.67000 GG TT 1 0.94200 0.77115 9.62000 PT ET 1 0.93400 0.84160 9.54000 NR EE 1 0.93100 0.83835 9.51000 LQ EE 1 0.89000 1.04141 9.10000 YY EE 1 0.90900 0.64234 9.29000 CQ EE 1 0.88600 0.95200 9.06000 YF SE 1 0.90100 0.97545 9.21000 R S HD HE 0 0.28000 1.92721 3.00000 VF HT 1 0.51100 1.77113 5.31000 DK HT 0 0.23200 2.25321 2.52000 KT HT L H N H A - A S KK ST NR -E 0 0.01900 2.89738 0.39000 LI -E 0 0.17800 2.45822 1.98000 PL -E 0 0.22700 2.40181 2.47000 QT -E 0 0.28600 2.09104 3.06000 PL EE 1 0.60800 1.20058 6.28000 QQ EE 1 0.88900 0.43276 9.09000 RK HE 1 0.89500 0.86769 9.15000 VA HT 1 0.79500 1.29091 8.15000 SN HT 1 0.70900 1.56164 7.29000 RS HG 1 0.55300 1.76076 5.73000 LW TG 1 0.62800 1.56078 6.48000 LF TG 1 0.79900 1.31989 8.19000 GN -T 1 0.74800 1.56150 7.68000 C - T - *