% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1ftp.ent 1ftpa { CHAIN A -0.46435 -0.80428 -0.37084 72.25323 -0.86226 0.50612 -0.01802 57.46141 0.20217 0.31140 -0.92852 44.46641 } /disk3/pdb/pdb1cbi.ent 1cbia { CHAIN A -0.83568 0.52008 0.17675 -9.57923 -0.41720 -0.39159 -0.82012 120.87167 -0.35729 -0.75907 0.54416 84.70100 } % Reading block file... Blocfile read: Length: 140 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 140 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 138 % The alignment: >1ftpa (cluster A) sequence >1cbia (cluster B) sequence >space >1ftpa_dssp (cluster A) secondary structure from DSSP >1cbia_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * V - KP G- EN G- 0 0.14400 1.68631 1.64000 FF GS 1 0.60800 1.63692 6.28000 AA T- 1 0.75600 1.18643 7.76000 G T IG -E 1 0.58600 1.22775 6.06000 KT EE 1 0.89200 1.09041 9.12000 YW EE 1 0.91300 1.04951 9.33000 KK EE 1 0.91900 0.94433 9.39000 LM EE 1 0.88900 1.14598 9.09000 DR EE 1 0.88800 1.12110 9.08000 SS EE 1 0.90800 0.86894 9.28000 QS EE 1 0.90300 1.04264 9.23000 TE EE 1 0.91100 1.02094 9.31000 NN SS 1 0.93100 0.76502 9.51000 FF HH 1 0.93300 0.72144 9.53000 ED HH 1 0.93300 0.70338 9.53000 EE HH 1 0.94000 0.71448 9.60000 YL HH 1 0.94200 0.60705 9.62000 ML HH 1 0.90100 0.90493 9.21000 KK HH 1 0.86100 1.18728 8.81000 AA HH 1 0.87700 1.11165 8.97000 IL TT 1 0.86400 0.92921 8.84000 GG TT 1 0.76500 1.43345 7.85000 VV -- 1 0.74100 1.45920 7.61000 GN -- 1 0.56700 1.84853 5.87000 AA HH 1 0.69200 1.65386 7.12000 IM HH 1 0.68600 1.70246 7.06000 EL HH 1 0.71700 1.63342 7.37000 RR HH 1 0.80700 1.38572 8.27000 KK HH 1 0.85300 1.23343 8.73000 AV HH 1 0.79500 1.40942 8.15000 GA HH 1 0.72300 1.57848 7.43000 LV TH 1 0.78500 1.45388 8.05000 AA TH 1 0.70500 1.47246 7.25000 A H A T LS -T 0 0.26000 1.68163 2.80000 SK -S 1 0.68600 1.68279 7.06000 PP -- 1 0.70400 1.60314 7.24000 VH EE 1 0.84100 1.24809 8.61000 IV EE 1 0.85900 1.23088 8.79000 EE EE 1 0.72700 1.54287 7.47000 LI EE 1 0.79300 1.23344 8.13000 ER EE 1 0.70000 1.00763 7.20000 I E LQ -E 0 0.02100 2.61646 0.41000 DD SE 0 0.08700 2.76332 1.07000 GG ST 0 0.02400 2.82922 0.44000 DD ST 0 0.19900 2.14289 2.19000 KQ EE 1 0.50200 1.70661 5.22000 FF EE 1 0.74000 1.17992 7.60000 KY EE 1 0.83400 1.21610 8.54000 LI EE 1 0.81100 1.41592 8.31000 TK EE 1 0.76000 1.52873 7.80000 ST EE 1 0.84000 1.24876 8.60000 KS EE 1 0.69100 1.47187 7.11000 TT -- 0 0.40600 1.96356 4.26000 AT SS 0 0.19600 2.41073 2.16000 IV SS 0 0.05200 2.75122 0.72000 KR -- 0 0.23600 2.20523 2.56000 NT EE 1 0.58400 1.64298 6.04000 TT EE 1 0.80300 1.39652 8.23000 EE EE 1 0.76300 1.52122 7.83000 FI EE 1 0.82300 1.29788 8.43000 TN EE 1 0.88300 1.09504 9.03000 FF EE 1 0.91400 0.86560 9.34000 KK EE 1 0.88400 1.12902 9.04000 LV TT 1 0.90400 1.07954 9.24000 GG TT 1 0.87400 1.22583 8.94000 EE -S 1 0.90500 1.07844 9.25000 EG -- 1 0.91100 1.06251 9.31000 FF EE 1 0.88800 1.17587 9.08000 DE EE 1 0.85300 1.22768 8.73000 EE EE 1 0.76700 1.19489 7.87000 EE EE 1 0.74400 1.29353 7.64000 TT -- 1 0.72600 1.52342 7.46000 LV TT 1 0.59800 1.82780 6.18000 DD TT 1 0.66500 1.74907 6.85000 GG SS 1 0.63600 1.75852 6.56000 RR -- 1 0.76500 1.40729 7.85000 KK EE 1 0.88000 1.07730 9.00000 VC EE 1 0.91200 1.00955 9.32000 KR EE 1 0.90500 0.96020 9.25000 SS EE 1 0.90600 0.70274 9.26000 TL EE 1 0.89100 1.05725 9.11000 IP EE 1 0.90200 1.11127 9.22000 TT EE 1 0.87300 1.23127 8.93000 QW EE 1 0.82000 1.27801 8.40000 DE -E 1 0.72400 1.56312 7.44000 GN SE 1 0.70900 1.58895 7.29000 PE ST 1 0.72700 1.52007 7.47000 NN ST 1 0.83000 1.30747 8.50000 KK EE 1 0.88400 1.10764 9.04000 LI EE 1 0.91000 1.00283 9.30000 VH EE 1 0.92000 0.85158 9.40000 HC EE 1 0.87900 1.17384 8.99000 ET EE 1 0.88600 1.13163 9.06000 QQ EE 1 0.88500 0.93985 9.05000 T E L E L S E S KG -S GD S- 0 0.01100 2.35082 0.31000 DG S- 1 0.44300 1.57642 4.63000 HP S- 1 0.74800 1.51719 7.68000 PK -- 1 0.76900 1.31904 7.89000 TT EE 1 0.76100 1.34018 7.81000 IY EE 1 0.76500 1.47091 7.85000 IW EE 1 0.86600 1.07299 8.86000 IT EE 1 0.84600 1.26595 8.66000 RR EE 1 0.89300 0.98666 9.13000 EE EE 1 0.88800 1.03716 9.08000 FL EE SA -E KN ST ED ST 0 0.27600 1.85082 2.96000 QE EE 1 0.73200 1.16788 7.52000 CL EE 1 0.91300 0.78848 9.33000 VI EE 1 0.92300 0.83367 9.43000 IL EE 1 0.86700 1.15801 8.87000 TT EE 1 0.83200 1.34972 8.52000 IF EE 1 0.84300 1.34646 8.63000 KG EE 1 0.78300 1.49824 8.03000 LA EE 1 0.80400 1.43600 8.24000 GD TT 1 0.86200 1.27179 8.82000 DD TT 1 0.88500 1.18615 9.05000 LV EE 1 0.89600 1.09033 9.16000 VV EE 1 0.87900 1.19791 8.99000 AC EE 1 0.87200 1.17032 8.92000 TT EE 1 0.90900 0.90141 9.29000 RR EE 1 0.92900 0.81301 9.49000 II EE 1 0.90700 1.02219 9.27000 YY EE 1 0.90100 1.11945 9.21000 KV EE 1 0.88700 1.17513 9.07000 AR EE 1 0.90500 1.03408 9.25000 *