% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1fas.ent 1fas { ALL -0.55709 0.24423 0.79369 63.22219 -0.75950 0.23662 -0.60592 27.63164 -0.33579 -0.94041 0.05368 35.27520 } /disk3/pdb/pdb1cdt.ent 1cdta { CHAIN A -0.31745 0.62391 -0.71406 42.99857 -0.12125 0.72012 0.68315 -15.00207 0.94048 0.30344 -0.15301 -17.46940 } % Reading block file... Blocfile read: Length: 64 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 64 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 64 % The alignment: >1fas (cluster A) sequence >1cdta (cluster B) sequence >space >1fas_dssp (cluster A) secondary structure from DSSP >1cdta_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * TL -- 1 0.74900 1.41466 7.69000 MK EE 1 0.85100 0.79141 8.71000 CC EE 1 0.94000 0.59730 9.60000 YN EE 1 0.84400 0.83546 8.64000 S - HK S- 1 0.46000 1.65475 4.80000 TL SS 1 0.74200 1.47264 7.62000 TI SS 1 0.79600 1.29145 8.16000 TP ST 1 0.77900 1.08400 7.99000 S - R S AI ST 0 0.16200 2.23379 1.82000 IA -- 1 0.50000 1.81917 5.20000 LY EE 1 0.73100 1.34849 7.51000 TK EE 1 0.78100 1.35846 8.01000 NT EE 1 0.85200 1.16677 8.72000 CC -- 1 0.48600 1.42261 5.06000 GP T- 0 0.20900 2.20593 2.29000 E T G T EK T- 0 0.08900 2.35124 1.09000 NN S- 0 0.38400 0.86957 4.04000 SL -E 1 0.94100 0.56456 9.61000 CC EE 1 0.95200 0.61133 9.72000 YY EE 1 0.94500 0.72372 9.65000 RK EE 1 0.93800 0.65472 9.58000 KM EE 1 0.92200 0.89286 9.42000 SM EE 1 0.91700 0.68539 9.37000 RL EE 1 0.78900 1.15983 8.09000 RA ST 1 0.59400 1.57344 6.14000 HS ST 0 0.30600 2.01002 3.26000 PK ST 1 0.60200 1.09677 6.22000 PK ST 1 0.69600 1.52569 7.16000 KM -- 1 0.84000 1.13138 8.60000 MV -E 1 0.89300 1.09898 9.13000 VP EE 1 0.92100 0.84761 9.41000 LV EE 1 0.91900 0.84708 9.39000 GK EE 1 0.91300 0.74372 9.33000 RR EE 1 0.92600 0.67142 9.46000 GG EE 1 0.92800 0.82091 9.48000 C E I E CN ES GV SS 0 0.25500 2.17838 2.75000 CC -- 1 0.62800 1.56596 6.48000 PP -- 1 0.73900 1.61734 7.59000 PK -- 1 0.72000 1.62216 7.40000 GN -- 1 0.77900 1.35839 7.99000 DS -- 1 0.88200 0.92818 9.02000 DA SS 1 0.93600 0.81405 9.56000 YL SS 1 0.94300 0.65365 9.63000 LV EE 1 0.93200 0.78692 9.52000 EK EE 1 0.88600 1.00097 9.06000 VY EE 1 0.92500 0.34984 9.45000 KV EE 1 0.95100 0.49399 9.71000 CC EE 1 0.94500 0.69135 9.65000 CC EE 1 0.93200 0.75408 9.52000 T - SS S- 0 0.35900 1.80307 3.79000 PT SS 1 0.70200 1.48161 7.22000 DD TT 1 0.85300 0.87695 8.73000 KR TT 1 0.93500 0.63115 9.55000 CC T- 1 0.94100 0.78932 9.61000 N T *