% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1cyo.ent 1cyo { ALL 0.29647 -0.83430 -0.46480 94.16418 -0.67963 -0.52622 0.51108 58.18553 -0.67098 0.16437 -0.72302 53.93863 } /disk3/pdb/pdb1ltd.ent 1ltda.1 { A 10 _ to A 97 _ 0.99999 0.00087 -0.00432 0.05543 -0.00087 1.00000 0.00014 0.06942 0.00432 -0.00013 0.99999 -0.34151 } % Reading block file... Blocfile read: Length: 96 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 96 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 96 % The alignment: >1cyo (cluster A) sequence >1ltda.1 (cluster B) sequence >space >1cyo_dssp (cluster A) secondary structure from DSSP >1ltda.1_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * S - K - A S V - K - YK E- 1 0.84800 1.28745 8.68000 YI E- 1 0.88400 1.06062 9.04000 TS -- 1 0.92800 0.86967 9.48000 LP HH 1 0.94000 0.84548 9.60000 EA HH 1 0.93800 0.87824 9.58000 EE HH 1 0.93300 0.91327 9.53000 IV HH 1 0.92600 0.84182 9.46000 QA TH 1 0.89700 0.94529 9.17000 KK TH 1 0.90800 0.87106 9.28000 HH -T 1 0.92300 0.80396 9.43000 NN E- 1 0.89700 1.03510 9.17000 NK ES 1 0.83300 1.09408 8.53000 SP TT 1 0.73800 1.44757 7.58000 KD TT 1 0.75600 1.43844 7.76000 SD ES 1 0.86800 0.95367 8.88000 TC E- 1 0.92900 0.80780 9.49000 WW EE 1 0.94500 0.71150 9.65000 LV EE 1 0.95000 0.64802 9.70000 IV EE 1 0.95500 0.49952 9.75000 LI ES 1 0.95300 0.55872 9.73000 HN TS 1 0.94600 0.61313 9.66000 YG TS 1 0.94400 0.64646 9.64000 KY EE 1 0.94800 0.68776 9.68000 VV EE 1 0.95300 0.53298 9.73000 YY EE 1 0.94900 0.67969 9.69000 DD EE 1 0.94100 0.74583 9.61000 LL -- 1 0.94500 0.66017 9.65000 TT TT 1 0.95300 0.62192 9.73000 KR TT 1 0.95200 0.66890 9.72000 FF TT 1 0.94500 0.67277 9.65000 LL TG 1 0.92000 0.88795 9.40000 EP TG 1 0.90600 0.95901 9.26000 EN TG 1 0.92100 0.87346 9.41000 HH -- 1 0.94500 0.65640 9.65000 PP TT 1 0.94100 0.62016 9.61000 GG TT 1 0.92100 0.89199 9.41000 GG -- 1 0.90300 0.97835 9.23000 EQ SH 1 0.91800 0.83463 9.38000 ED HH 1 0.94000 0.71144 9.60000 VV HH 1 0.94900 0.58842 9.69000 LI HH 1 0.93200 0.60025 9.52000 RK HH 1 0.87800 0.99043 8.98000 EF HH 1 0.86700 1.14428 8.87000 QN HT 1 0.91400 0.94411 9.34000 AA TT 1 0.93600 0.80237 9.56000 GG TT 1 0.94600 0.75618 9.66000 GK SS 1 0.91800 0.90139 9.38000 DD BB 1 0.93300 0.65029 9.53000 AV -- 1 0.94900 0.65066 9.69000 TT HH 1 0.95000 0.57384 9.70000 EA HH 1 0.93400 0.77214 9.54000 NI HH 1 0.94600 0.53576 9.66000 FF HH 1 0.88100 0.68036 9.01000 EE HG 1 0.74700 1.34042 7.67000 DP HG 1 0.68300 1.64245 7.03000 V T GL TG 1 0.43300 1.48202 4.53000 HH -S 1 0.79300 0.48311 8.13000 SA -- 1 0.76000 1.00514 7.80000 TP HT 1 0.53500 1.76785 5.55000 DN HT 0 0.36500 1.97225 3.85000 AV HH 0 0.38800 1.33550 4.08000 RI HH 0 0.34800 1.85228 3.68000 ED HH K H Y H LI HS SA H- 0 0.00200 2.74958 0.22000 KP TG 0 0.19300 2.21437 2.13000 TE TG 0 0.11600 2.42610 1.36000 FK TG 0 0.41000 1.70002 4.30000 IK EE 1 0.76500 0.87766 7.85000 IL EE 1 0.91100 0.96039 9.31000 GG EE 1 0.93100 0.93273 9.51000 EP EE 1 0.90500 0.99636 9.25000 LL E- 1 0.88500 0.62199 9.05000 HQ -S P G D G D G RG GS SS G- 0 0.28900 2.16949 3.09000 KM G- 0 0.14900 2.15969 1.69000 IP -- 0 0.02900 2.66367 0.49000 P G E G L G V B C - P - P - *