% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1bpi.ent 1bpi { ALL -0.45935 -0.86295 -0.21055 20.82969 0.29082 0.07791 -0.95361 -6.46624 0.83933 -0.49924 0.21517 -18.80208 } /disk3/pdb/pdb1dtx.ent 1dtx { ALL 0.87723 0.47334 -0.07996 -9.76643 0.43967 -0.85906 -0.26216 7.76869 -0.19280 0.19478 -0.96167 9.98306 } % Reading block file... Blocfile read: Length: 59 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 59 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 59 % The alignment: >1bpi (cluster A) sequence >1dtx (cluster B) sequence >space >1bpi_dssp (cluster A) secondary structure from DSSP >1dtx_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * X - P - RR -S 1 0.67300 1.66311 6.93000 PR -S 1 0.79600 1.28271 8.16000 DK GG 1 0.86000 1.26301 8.80000 FL GG 1 0.87000 1.12831 8.90000 CC GG 1 0.92000 0.56270 9.40000 LI GG 1 0.94000 0.77482 9.60000 EL SS 1 0.91600 0.80705 9.36000 PH -- 1 0.86700 0.97003 8.87000 PR -- 1 0.86500 1.11472 8.85000 YN -- 1 0.87000 1.07302 8.90000 TP -- 1 0.91100 0.69175 9.31000 GG -- 1 0.94700 0.71186 9.67000 PR SS 1 0.92200 0.89950 9.42000 CC SS 1 0.91500 0.62514 9.35000 KY -S 1 0.87400 1.08310 8.94000 AD -- 1 0.92200 0.90054 9.42000 RK -- 1 0.92400 0.99895 9.44000 II EE 1 0.91600 1.03652 9.36000 IP EE 1 0.89100 1.09858 9.11000 RA EE 1 0.92700 0.73299 9.47000 YF EE 1 0.94800 0.57206 9.68000 FY EE 1 0.94800 0.68547 9.68000 YY EE 1 0.95000 0.66909 9.70000 NN EE 1 0.94000 0.74369 9.60000 AQ TT 1 0.91700 0.99626 9.37000 KK TT 1 0.93100 0.93848 9.51000 AK TT 1 0.93000 0.95222 9.50000 GK TT 1 0.92700 0.93596 9.47000 LQ EE 1 0.93200 0.83667 9.52000 CC EE 1 0.94700 0.65586 9.67000 QE EE 1 0.94700 0.69619 9.67000 TR EE 1 0.94300 0.46178 9.63000 FF EE 1 0.90600 0.84958 9.26000 VD EE 1 0.84800 1.20422 8.68000 YW EE 1 0.91700 0.87840 9.37000 GS -- 1 0.94300 0.79674 9.63000 GG SS 1 0.94400 0.72030 9.64000 CC SS 1 0.81100 0.91493 8.31000 RG S- 1 0.60400 1.59894 6.24000 AG -- 1 0.44400 1.94359 4.64000 KN -- 1 0.71400 1.32572 7.34000 RS SS 1 0.89300 1.00208 9.13000 NN S- 1 0.92900 0.78628 9.49000 NR -- 1 0.94300 0.66222 9.63000 FF BB 1 0.95200 0.60337 9.72000 KK SS 1 0.94900 0.65595 9.69000 ST SS 1 0.95400 0.51423 9.74000 AI HH 1 0.95000 0.67450 9.70000 EE HH 1 0.94500 0.71948 9.65000 DE HH 1 0.95000 0.57165 9.70000 CC HH 1 0.95100 0.50874 9.71000 MR HH 1 0.93500 0.77821 9.55000 RR HH 1 0.92600 0.90131 9.46000 TT HH 1 0.93700 0.79299 9.57000 CC HH 1 0.94200 0.73913 9.62000 GI ST G - *