% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1aru.ent 1aru { ALL -0.14114 0.30087 0.94313 -9.79320 -0.42996 -0.87679 0.21536 67.75243 0.89177 -0.37514 0.25308 182.07672 } /disk3/pdb/pdb1apx.ent 1apxa { CHAIN A 0.69768 0.23348 0.67728 9.49514 -0.50960 0.82622 0.24015 54.51804 -0.50353 -0.51269 0.69542 205.11238 } % Reading block file... Blocfile read: Length: 340 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 340 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 340 % The alignment: >1aru (cluster A) sequence >1apxa (cluster B) sequence >space >1aru_dssp (cluster A) secondary structure from DSSP >1apxa_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * S - V - T B CG -- 0 0.00000 0.00000 0.00000 PK T- 0 0.00000 0.00000 0.00000 GS TS 0 0.00000 0.00000 0.00000 GY S- 0 0.00000 0.00000 0.00000 QP -- 0 0.00000 0.00000 0.00000 ST B- 0 0.00000 0.00000 0.00000 TV -- 0 0.00000 0.00000 0.00000 SS S- 0 0.00000 0.00000 0.00000 NP -H 0 0.00600 2.46415 0.26000 SD GH 0 0.19200 2.37245 2.12000 QY GH 0 0.34700 1.94488 3.67000 CQ GH 1 0.51800 1.55285 5.38000 CK HH 1 0.83600 1.12641 8.56000 VA HH 1 0.84600 1.13981 8.66000 WI HH 1 0.70500 1.48994 7.25000 FE HH 1 0.53800 1.79386 5.58000 DK HH 1 0.65800 1.58873 6.78000 VA HH 1 0.78100 1.28708 8.01000 LK HH 1 0.59600 1.68827 6.16000 DR HH 1 0.46800 1.94940 4.88000 DK HH 1 0.62700 1.70412 6.47000 LL HH 1 0.74400 1.48138 7.64000 QR HH 1 0.59900 1.80021 6.19000 TG HH 1 0.54200 1.94190 5.62000 NF TH 1 0.57700 1.83141 5.97000 FI TH 0 0.39200 2.07639 4.12000 YA TH Q T G T S T K - CE -H EK SH SK HT 0 0.03200 2.21582 0.52000 PC H- 0 0.42000 1.23523 4.40000 VA HH 1 0.91300 0.89523 9.33000 RP HH 1 0.94300 0.67624 9.63000 KL HH 1 0.92100 0.86098 9.41000 II HH 1 0.88500 1.11587 9.05000 LL HH 1 0.90200 1.08798 9.22000 RR HH 1 0.91300 0.99673 9.33000 IL HH 1 0.90600 1.05773 9.26000 VA HH 1 0.89900 1.12181 9.19000 FW HH 1 0.89400 1.13737 9.14000 HH HH 1 0.92000 0.99205 9.40000 DS HH 1 0.93400 0.88667 9.54000 AA HH 1 0.92700 0.86167 9.47000 IG TT 1 0.88500 1.10120 9.05000 GT -T 1 0.88900 1.03553 9.09000 FF -- 1 0.89400 1.05508 9.14000 SD -B 1 0.90200 0.94870 9.22000 PS HT 1 0.83600 1.31272 8.56000 AK HT 1 0.74800 1.39876 7.68000 L H T H A H A T G T Q S FT -T 0 0.17200 2.29721 1.92000 GK -T 0 0.29500 2.13143 3.15000 GT -B 1 0.53400 1.51332 5.54000 GG -- 1 0.44000 1.81930 4.60000 GG SS 1 0.71700 1.02623 7.37000 AP SS 1 0.89700 1.06160 9.17000 DF SS 1 0.90200 0.93582 9.22000 GG SS 1 0.83800 1.24346 8.58000 ST HG 1 0.88700 1.05682 9.07000 II HG 1 0.89100 0.77074 9.11000 I H A H HK TG SH HS 0 0.39700 1.56765 4.17000 NQ HH 1 0.76500 0.64164 7.85000 IA HH 1 0.91500 0.89788 9.35000 EE HH 1 0.90000 1.03649 9.20000 LL TH 1 0.86100 1.24302 8.81000 AA TT 1 0.88000 1.19799 9.00000 FH SS 1 0.89600 1.08888 9.16000 PG GG 1 0.84600 1.24888 8.66000 AA GG 1 0.89900 0.96160 9.19000 NN GG 1 0.93100 0.85454 9.51000 GN TT 1 0.92600 0.79500 9.46000 GG TT 1 0.88300 1.14191 9.03000 LL -H 1 0.91500 1.03341 9.35000 TD HH 1 0.92000 0.86808 9.40000 DI HH 1 0.91100 0.96859 9.31000 TA HH 1 0.92100 0.91125 9.41000 IV HH 1 0.86100 1.08524 8.81000 ER HH 1 0.77200 1.34508 7.92000 AL HH 1 0.66800 1.50385 6.88000 LL HH 1 0.65100 1.57522 6.71000 RE HH 1 0.58800 1.83880 6.08000 AP HH 1 0.53100 1.93125 5.51000 VI HH 1 0.67900 1.61299 6.99000 GK HH 1 0.70500 1.56028 7.25000 IE HH 1 0.59100 1.82371 6.11000 NQ HT 1 0.62200 1.61170 6.42000 HF H- 1 0.78200 0.77370 8.02000 P T GI TT 1 0.45000 1.67451 4.70000 VV -S 1 0.81000 0.95166 8.30000 SS -- 1 0.93900 0.66807 9.59000 FY HH 1 0.93100 0.82581 9.51000 GA HH 1 0.90400 1.01041 9.24000 DD HH 1 0.93400 0.73109 9.54000 LF HH 1 0.92700 0.73454 9.47000 IY HH 1 0.87300 1.05812 8.93000 QQ HH 1 0.84500 1.19598 8.65000 FL HH 1 0.90500 0.98289 9.25000 AA HH 1 0.92100 0.95133 9.41000 TG HH 1 0.87600 1.18201 8.96000 AV HH 1 0.85500 1.30846 8.75000 VV HH 1 0.86600 1.27492 8.86000 GA HH 1 0.82900 1.39515 8.49000 MV HH 1 0.84900 1.33968 8.69000 SE HH 1 0.81700 1.35248 8.37000 NI TH 1 0.85400 1.19318 8.74000 CT ST 1 0.80500 1.08132 8.25000 P T GG TT 0 0.38700 1.91026 4.07000 SG -- 1 0.68400 1.09688 7.04000 PP -- 1 0.92300 0.94538 9.43000 RE -- 1 0.93000 0.92156 9.50000 LV -- 1 0.92000 0.96027 9.40000 EP -- 1 0.93400 0.69933 9.54000 FF -- 1 0.90600 0.97940 9.26000 LH E- 1 0.91200 0.85339 9.32000 TP E- 1 0.91700 0.88195 9.37000 GG -- 1 0.90400 1.06442 9.24000 RR -- 1 0.92400 0.90092 9.44000 SE -- 1 0.83900 1.03534 8.59000 ND S- 1 0.70300 1.52709 7.23000 SK -- 1 0.45100 1.70864 4.71000 SP -S 0 0.31900 1.93498 3.39000 QE -S 1 0.60700 1.43373 6.27000 PP -- 1 0.79100 0.66320 8.11000 SP -- 1 0.77800 1.21456 7.98000 PP -- 1 0.77700 1.28499 7.97000 PE SS 1 0.88800 1.06191 9.08000 SG S- 1 0.93400 0.79553 9.54000 LR -- 1 0.95000 0.62525 9.70000 IL SS 1 0.95600 0.44477 9.76000 PP -- 1 0.88300 0.57098 9.03000 GD -- 1 0.77500 1.22151 7.95000 PA TT 1 0.89200 0.66618 9.12000 GT TT 1 0.89300 0.92888 9.13000 NK S- 1 0.71100 1.34811 7.31000 TG -- 1 0.56600 1.61630 5.86000 VS HH 1 0.69500 1.32166 7.15000 TD HH 1 0.84800 0.52619 8.68000 AH HH 1 0.83500 1.10359 8.55000 IL HH 1 0.80300 1.26966 8.23000 LR HH 1 0.87500 1.03496 8.95000 DD HH 1 0.88800 0.96007 9.08000 RV HH 1 0.86700 1.13153 8.87000 MF HH 1 0.91600 0.95635 9.36000 GG HT 1 0.88000 0.87549 9.00000 K T DA HT 1 0.56000 1.44911 5.80000 AM HS 1 0.82400 0.86567 8.44000 GG T- 1 0.93500 0.67815 9.55000 FL -- 1 0.87800 1.00124 8.98000 SS -- 1 0.80500 1.32815 8.25000 PD HH 1 0.84500 1.25457 8.65000 DQ HH 1 0.83400 1.25325 8.54000 ED HH 1 0.85100 1.06730 8.71000 VI HH 1 0.92200 0.56039 9.42000 VV HH 1 0.93100 0.61852 9.51000 DA HH 1 0.88700 1.06093 9.07000 LL HH 1 0.87600 1.03994 8.96000 LS GH 1 0.86600 1.10132 8.86000 AG GG 1 0.83200 1.27478 8.52000 AG GG 1 0.88900 0.84163 9.09000 HH GG 1 0.91700 0.91017 9.37000 ST GG 1 0.92900 0.95685 9.49000 LI GS 1 0.88100 1.01530 9.01000 AG -- 1 0.73200 1.46131 7.52000 SA EE 1 0.87100 0.93641 8.91000 QA EE 1 0.92500 0.88318 9.45000 H - K T E T ER ST 0 0.00900 2.41620 0.29000 GS ST 1 0.44500 1.88180 4.65000 LG SS 1 0.61900 1.56429 6.39000 NF -- 0 0.37500 1.89469 3.95000 S G A G I G F T RE T- 0 0.03400 2.51872 0.54000 SG EE 0 0.39800 1.46718 4.18000 PP EE 1 0.82600 1.15136 8.46000 LW SS 1 0.86400 0.52910 8.84000 DT SS 1 0.83000 1.17929 8.50000 SS SS 1 0.81500 1.39691 8.35000 TN -- 1 0.79400 1.46254 8.14000 PP TT 1 0.84800 1.20672 8.68000 QL TT 1 0.79200 1.41620 8.12000 VI SS 1 0.81600 1.39288 8.36000 FF -- 1 0.86000 1.24737 8.80000 DD SS 1 0.88300 1.15939 9.03000 TN TT 1 0.88900 1.15469 9.09000 QS HH 1 0.91400 0.97897 9.34000 FY HH 1 0.94100 0.73593 9.61000 YF HH 1 0.93800 0.70741 9.58000 IT HH 1 0.90400 1.00470 9.24000 EE HH 1 0.92900 0.80574 9.49000 TL HH 1 0.86800 1.00097 8.88000 LL TH 1 0.79600 1.33284 8.16000 LT BT 1 0.77400 1.32059 7.94000 KG -- 1 0.66300 1.63860 6.83000 G - T - T B Q - P - G S P S S S L - G - F T A T E E E E L - S B PE S- 0 0.11500 1.84784 1.35000 FK S- 1 0.63600 1.79124 6.56000 PD TT 1 0.50100 1.88896 5.21000 GG TT 1 0.69700 1.35425 7.17000 EL -S 1 0.87000 0.99675 8.90000 FL -- 1 0.87000 1.17360 8.90000 RQ E- 1 0.88800 1.17957 9.08000 ML E- 1 0.90800 1.06797 9.28000 RP HH 1 0.90200 1.08963 9.22000 SS HH 1 0.92200 0.86673 9.42000 DD HH 1 0.92200 0.57804 9.42000 AK HH 1 0.87200 1.08957 8.92000 LA HT 1 0.82600 1.28907 8.46000 LL HT 1 0.80800 1.33243 8.28000 AL HT 1 0.76100 1.51844 7.81000 RT HS 1 0.71000 1.51647 7.30000 DD S- 1 0.70900 1.48267 7.29000 SS TT 1 0.68400 1.55664 7.04000 RV TT 1 0.43400 1.91501 4.54000 TF TH 1 0.71700 1.23031 7.37000 AR HH 1 0.90600 1.06211 9.26000 CP HH 1 0.88800 1.18363 9.08000 RL HH 1 0.87800 1.23912 8.98000 WV HH 1 0.88200 1.21398 9.02000 QE HH 1 0.88900 1.18468 9.09000 SK HH 1 0.88400 1.20364 9.04000 MY TH 1 0.89100 1.05442 9.11000 TA SH 1 0.88500 0.97927 9.05000 SA SH 1 0.90800 0.93017 9.28000 SD -- 1 0.92200 0.98666 9.42000 NE HH 1 0.92000 0.98269 9.40000 ED HH 1 0.94100 0.73707 9.61000 VV HH 1 0.95200 0.65221 9.72000 MF HH 1 0.95400 0.59036 9.74000 GF HH 1 0.95600 0.49513 9.76000 QA HH 1 0.95700 0.48768 9.77000 RD HH 1 0.95700 0.43636 9.77000 YY HH 1 0.95600 0.48738 9.76000 RA HH 1 0.95400 0.54801 9.74000 AE HH 1 0.95000 0.66330 9.70000 AA HH 1 0.94400 0.74860 9.64000 MH HH 1 0.93400 0.89357 9.54000 AL HH 1 0.92800 0.94333 9.48000 KK HH 1 0.93200 0.83385 9.52000 ML HH 1 0.92300 0.88122 9.43000 SS HH 1 0.89300 1.08549 9.13000 VE TT 1 0.92100 0.91643 9.41000 LL TT 1 0.91600 0.76162 9.36000 GG TT 1 0.83500 1.11725 8.55000 FF S- 1 0.84600 0.96961 8.66000 DA -S 0 0.29400 1.12142 3.14000 RE G- 0 0.01500 2.48838 0.35000 N G A G L S T E D E C - S G D G V G I S P - S - A - V - S - N - N - A - A - P - V E I E P - G T G T L - T - V G D G D G I B E - V - S - C - P T S T E S P - F - P - E - I - A E T E A - S - G S P S L - P - S - L - A - P - A - *