% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1aak.ent 1aak { ALL 0.63928 -0.65127 -0.40888 21.35299 0.74206 0.38301 0.55013 17.05611 -0.20168 -0.65510 0.72812 22.18461 } /disk3/pdb/pdb2uce.ent 2uce { ALL 1.00000 -0.00020 0.00007 0.00977 0.00020 1.00000 -0.00003 -0.00035 -0.00007 0.00003 1.00000 0.00247 } % Reading block file... Blocfile read: Length: 151 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 151 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 150 % The alignment: >1aak (cluster A) sequence >2uce (cluster B) sequence >space >1aak_dssp (cluster A) secondary structure from DSSP >2uce_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * M - S - TM -- 1 0.60500 1.69666 6.25000 PS -- 1 0.78200 0.95183 8.02000 AS TS 1 0.72300 1.17917 7.43000 RS TH 1 0.54500 1.47877 5.65000 KK TH 1 0.72500 1.08738 7.45000 RR HH 1 0.89700 0.91162 9.17000 LI HH 1 0.94500 0.68187 9.65000 MA HH 1 0.91900 0.65655 9.39000 RK HH 1 0.86500 1.16797 8.85000 DE HH 1 0.85500 1.13485 8.75000 FL HH 1 0.85300 1.01213 8.73000 S H KD GH 0 0.17700 2.11922 1.97000 RL GT 1 0.55200 1.43264 5.72000 LE G- 1 0.53400 1.76304 5.54000 QR TS 1 0.43000 1.88927 4.50000 QD TS 1 0.55100 1.27606 5.71000 DP S- 0 0.40400 1.90423 4.24000 P - PP -- 0 0.39300 2.05763 4.13000 AT TS 1 0.59800 1.66454 6.18000 GS TS 1 0.82700 1.06186 8.47000 IC EE 1 0.92000 0.95109 9.40000 SS EE 1 0.89000 1.07270 9.10000 GA EE 1 0.91400 0.88134 9.34000 AG EE 1 0.94100 0.62862 9.61000 PP EE 1 0.88700 0.86355 9.07000 QV EE 1 0.75400 1.32236 7.74000 DG TT 1 0.53800 1.76070 5.58000 ND TT 1 0.66500 1.34196 6.85000 ND EE 1 0.86500 0.40684 8.85000 IL EE 1 0.95200 0.58113 9.72000 MY EE 1 0.95600 0.31400 9.76000 LH EE 1 0.95800 0.33658 9.78000 WW EE 1 0.95600 0.47918 9.76000 NQ EE 1 0.95700 0.33851 9.77000 AA EE 1 0.94900 0.57386 9.69000 VS EE 1 0.93400 0.80340 9.54000 II EE 1 0.92200 0.96887 9.42000 FM EE 1 0.92600 0.92833 9.46000 GG B- 1 0.91600 0.91165 9.36000 PP -- 1 0.91200 0.88856 9.32000 DA TT 1 0.74700 1.18925 7.67000 DD TT 1 0.56700 1.64120 5.87000 TS SS 1 0.74900 1.39431 7.69000 PP TT 1 0.87200 1.20579 8.92000 WY TT 1 0.87200 1.16278 8.92000 DA BT 1 0.91000 0.81667 9.30000 GG TT 1 0.92800 0.41179 9.48000 GG -- 1 0.89900 0.95048 9.19000 TV EE 1 0.94200 0.51235 9.62000 FF EE 1 0.94900 0.62105 9.69000 KF EE 1 0.94500 0.70085 9.65000 LL EE 1 0.95500 0.51885 9.75000 SS EE 1 0.95800 0.44081 9.78000 LI EE 1 0.95600 0.50653 9.76000 QH EE 1 0.93300 0.61131 9.53000 FF -- 1 0.86800 0.94101 8.88000 SP -- 1 0.74100 1.35876 7.61000 ET TT 1 0.72300 1.32337 7.43000 DD TT 1 0.87600 0.47096 8.96000 YY TT 1 0.95200 0.60223 9.72000 PP TT 1 0.94500 0.72373 9.65000 NF TS 1 0.94400 0.69185 9.64000 KK SS 1 0.94100 0.67365 9.61000 PP -- 1 0.92900 0.87003 9.49000 PP -- 1 0.93500 0.84841 9.55000 TK EE 1 0.92300 0.88187 9.43000 VI EE 1 0.94400 0.55380 9.64000 RS EE 1 0.95200 0.58079 9.72000 FF EE 1 0.94800 0.61065 9.68000 VT S- 1 0.94800 0.56727 9.68000 ST SS 1 0.93900 0.75682 9.59000 RK -- 1 0.90400 0.91630 9.24000 MI -- 1 0.87500 1.13906 8.95000 FY -- 1 0.91100 1.05141 9.31000 HH -- 1 0.92800 0.87399 9.48000 PP TT 1 0.93000 0.90894 9.50000 NN TT 1 0.92400 0.91166 9.44000 II BB 1 0.87300 0.99515 8.93000 YN -- 1 0.78100 1.34266 8.01000 AA TT 1 0.76000 1.40240 7.80000 DN TT 1 0.86700 1.00766 8.87000 GG S- 1 0.92700 0.72087 9.47000 SN -B 1 0.93700 0.71196 9.57000 II BB 1 0.94900 0.67652 9.69000 CC -- 1 0.93300 0.69618 9.53000 LL -- 1 0.89100 1.04798 9.11000 DD HG 1 0.92900 0.82595 9.49000 II HG 1 0.94700 0.64180 9.67000 LL HG 1 0.94700 0.38145 9.67000 QK HT 1 0.93000 0.77030 9.50000 ND TT 1 0.94500 0.56689 9.65000 QQ ST 1 0.94600 0.68427 9.66000 WW -- 1 0.94100 0.69167 9.61000 SS -- 1 0.94200 0.73895 9.62000 PP TT 1 0.94500 0.65386 9.65000 IA TT 1 0.93200 0.86286 9.52000 YL -- 1 0.92500 0.82717 9.45000 DT -- 1 0.91200 0.91900 9.32000 VL HH 1 0.89100 1.08501 9.11000 AS HH 1 0.92200 0.71454 9.42000 AK HH 1 0.93500 0.75290 9.55000 IV HH 1 0.93400 0.86678 9.54000 LL HH 1 0.94800 0.64342 9.68000 TL HH 1 0.95100 0.66641 9.71000 SS HH 1 0.94500 0.75293 9.65000 II HH 1 0.93700 0.79084 9.57000 QC HH 1 0.91600 0.96942 9.36000 SS HH 1 0.93200 0.73371 9.52000 LL HH 1 0.92700 0.52426 9.47000 LL HT 1 0.90400 0.92543 9.24000 CT HT 1 0.85500 1.15139 8.75000 DD SS 1 0.89200 0.92426 9.12000 PA -- 1 0.90800 1.00744 9.28000 NN -- 1 0.88600 1.14268 9.06000 PP TT 1 0.87500 1.21273 8.95000 ND TT 1 0.89500 1.11230 9.15000 SD SS 1 0.91000 1.00455 9.30000 PP -- 1 0.93200 0.82764 9.52000 AL SS 1 0.93400 0.65213 9.54000 NV -S 1 0.89300 1.02967 9.13000 SP HH 1 0.88900 1.12399 9.09000 EE HH 1 0.86100 1.17425 8.81000 AI HH 1 0.89900 0.88423 9.19000 AA HH 1 0.93700 0.68065 9.57000 RH HH 1 0.90500 0.89904 9.25000 MI HH 1 0.88400 1.09995 9.04000 YY HH 1 0.89700 1.09332 9.17000 SK HH 1 0.84400 1.23310 8.64000 ET HH 1 0.91100 0.80484 9.31000 SD -- 1 0.91400 0.91215 9.34000 KR HH 1 0.86100 1.19542 8.81000 RP HH 1 0.88500 1.13123 9.05000 EK HH 1 0.91800 0.94502 9.38000 YY HH 1 0.93700 0.65306 9.57000 NE HH 1 0.90900 0.94483 9.29000 RA HH 1 0.88300 1.07380 9.03000 RT HH 1 0.91800 0.90165 9.38000 VA HH 1 0.92900 0.83323 9.49000 RR HH 1 0.86800 0.70232 8.88000 DE HH 1 0.70700 1.38806 7.27000 VW HH 1 0.68700 1.50273 7.07000 VT HH 1 0.84500 1.12997 8.65000 EK HH 1 0.84100 1.00327 8.61000 QK HH SY TH WA T- *