% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb4gcr.ent 4gcr.1 { _ 1 _ to _ 85 _ 0.36280 -0.90379 0.22708 -1.21807 0.47720 -0.02913 -0.87828 47.01523 0.80042 0.42702 0.42071 18.64174 } /disk3/pdb/pdb2gcr.ent 2gcr.1 { _ 1 _ to _ 85 _ 0.84678 0.52985 -0.04730 -16.70122 -0.04832 -0.01187 -0.99874 98.71589 -0.52974 0.84800 0.01557 13.90228 } % Reading block file... Blocfile read: Length: 84 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 84 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 84 % The alignment: >4gcr.1 (cluster A) sequence >2gcr.1 (cluster B) sequence >space >4gcr.1_dssp (cluster A) secondary structure from DSSP >2gcr.1_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * GG -- 1 0.93600 0.81518 9.56000 KK E- 1 0.94500 0.53651 9.65000 II EE 1 0.94600 0.62055 9.66000 TT EE 1 0.95400 0.23216 9.74000 FF EE 1 0.95700 0.39753 9.77000 YY EE 1 0.95400 0.56550 9.74000 EE ES 1 0.94500 0.63914 9.65000 DD ES 1 0.93900 0.78210 9.59000 RR GG 1 0.94100 0.80200 9.61000 GG GG 1 0.93400 0.74381 9.54000 FF GG 1 0.93700 0.56306 9.57000 QQ E- 1 0.93200 0.63664 9.52000 GG ES 1 0.91100 0.92867 9.31000 HR ES 1 0.92800 0.80824 9.48000 CH EE 1 0.93700 0.70255 9.57000 YY EE 1 0.95100 0.21665 9.71000 EE EE 1 0.95100 0.44643 9.71000 CC EE 1 0.93200 0.78799 9.52000 SS SS 1 0.94400 0.42862 9.64000 SS SS 1 0.94300 0.71994 9.63000 DD -- 1 0.92900 0.71543 9.49000 CH BB 1 0.92400 0.78287 9.44000 PS SS 1 0.94000 0.78194 9.60000 NN -- 1 0.94600 0.69628 9.66000 LL -- 1 0.94700 0.72161 9.67000 QQ TT 1 0.94900 0.63097 9.69000 PP TT 1 0.94500 0.75668 9.65000 YY TT 1 0.94100 0.73898 9.61000 FF -- 1 0.94900 0.41786 9.69000 SS SS 1 0.94400 0.60294 9.64000 RR -- 1 0.93500 0.68171 9.55000 CC -- 1 0.94800 0.51629 9.68000 NN SS 1 0.95000 0.46584 9.70000 SS EE 1 0.93000 0.76377 9.50000 II EE 1 0.94200 0.51496 9.62000 RR EE 1 0.94700 0.61975 9.67000 VV EE 1 0.94800 0.50966 9.68000 DD E- 1 0.92900 0.75823 9.49000 SS ES 1 0.91700 0.86772 9.37000 GG SS 1 0.93900 0.67086 9.59000 CC -E 1 0.95400 0.43976 9.74000 WW EE 1 0.95400 0.52784 9.74000 MM EE 1 0.95600 0.31849 9.76000 LL EE 1 0.95700 0.46847 9.77000 YY EE 1 0.95800 0.43042 9.78000 EE ES 1 0.95200 0.50317 9.72000 RQ ES 1 0.94200 0.64020 9.62000 PP TT 1 0.94000 0.67276 9.60000 NN TT 1 0.95400 0.42313 9.74000 YF TS 1 0.95600 0.27986 9.76000 QT E- 1 0.95200 0.58903 9.72000 GG ES 1 0.94400 0.65976 9.64000 HC E- 1 0.91900 0.84787 9.39000 QQ EE 1 0.94300 0.32978 9.63000 YY EE 1 0.95300 0.43559 9.73000 FF EE 1 0.94900 0.61934 9.69000 LL EE 1 0.95500 0.47722 9.75000 RR -- 1 0.95600 0.53031 9.76000 RR SS 1 0.95700 0.46108 9.77000 GG EE 1 0.95900 0.36805 9.79000 DD EE 1 0.95800 0.40099 9.78000 YY EE 1 0.95300 0.52365 9.73000 PP -S 1 0.94400 0.72231 9.64000 DD SS 1 0.94100 0.74772 9.61000 YY GS 1 0.91800 0.86968 9.38000 QQ GG 1 0.93600 0.51645 9.56000 QQ GG 1 0.94400 0.71346 9.64000 WW GG 1 0.94900 0.56232 9.69000 MM TT 1 0.95000 0.58177 9.70000 GG -- 1 0.95200 0.58758 9.72000 FF SS 1 0.94500 0.63949 9.65000 NS SS 1 0.92500 0.84564 9.45000 DD SS 1 0.94600 0.54252 9.66000 SS -- 1 0.95500 0.50820 9.75000 IV -- 1 0.95100 0.64031 9.71000 RR -- 1 0.95000 0.65998 9.70000 SS EE 1 0.95500 0.47114 9.75000 CC EE 1 0.95300 0.57856 9.73000 RR EE 1 0.95500 0.40158 9.75000 LL EE 1 0.94900 0.48524 9.69000 II -E 1 0.94500 0.68652 9.65000 PP -- 1 0.95000 0.69656 9.70000 QH -- 1 0.94700 0.72731 9.67000 H - *