% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb4fxc.ent 4fxc { ALL -0.34567 -0.05421 0.93680 -18.99011 -0.92149 0.20801 -0.32801 30.21413 -0.17710 -0.97666 -0.12187 22.43521 } /disk3/pdb/pdb1fxi.ent 1fxia { CHAIN A 0.25491 -0.96696 -0.00767 51.14440 -0.58445 -0.14771 -0.79785 54.00424 0.77038 0.20790 -0.60282 -26.01412 } % Reading block file... Blocfile read: Length: 99 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 99 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 98 % The alignment: >4fxc (cluster A) sequence >1fxia (cluster B) sequence >space >4fxc_dssp (cluster A) secondary structure from DSSP >1fxia_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * AA -- TS -- 0 0.39600 1.06152 4.16000 YY -E 1 0.89300 1.00627 9.13000 KK EE 1 0.93200 0.81166 9.52000 VV EE 1 0.94400 0.65260 9.64000 TT EE 1 0.95500 0.45705 9.75000 LL EE 1 0.95400 0.47227 9.74000 IK EE 1 0.71400 0.61377 7.34000 N - E S AT TE EP TT 0 0.28600 1.25074 3.06000 GD ST 1 0.53200 0.71374 5.52000 IG -E 0 0.24300 1.98604 2.63000 ND EE 1 0.63000 1.28590 6.50000 EN EE 1 0.88100 0.72695 9.01000 TV EE 1 0.95400 0.45290 9.74000 II EE 1 0.94100 0.55383 9.61000 DT EE 1 0.89800 0.98310 9.18000 CV -E 1 0.93700 0.54796 9.57000 DP -- 1 0.93900 0.68828 9.59000 DD TT 1 0.94400 0.59369 9.64000 DD TT 1 0.94600 0.72768 9.66000 TE SS 1 0.93200 0.82009 9.52000 YY -- 1 0.94300 0.56754 9.63000 II HH 1 0.94600 0.33351 9.66000 LL HH 1 0.92000 0.78642 9.40000 DD HH 1 0.91500 0.91016 9.35000 AV HH 1 0.93400 0.81876 9.54000 AA HH 1 0.95000 0.54219 9.70000 EE HH 1 0.94600 0.66637 9.66000 EE HH 1 0.92800 0.87793 9.48000 AE TH 1 0.94300 0.70360 9.63000 GG TT 1 0.92700 0.81627 9.47000 LL -- 1 0.85700 1.13933 8.77000 DD -- 1 0.86600 1.16160 8.86000 LL -- 1 0.84100 1.13718 8.61000 PP -- 1 0.84700 1.00412 8.67000 YY -- 1 0.93000 0.71779 9.50000 SS SS 1 0.94900 0.59973 9.69000 CC SS 1 0.94200 0.67329 9.62000 RR SS 1 0.92900 0.76687 9.49000 AA SS 1 0.92100 0.70770 9.41000 GG SS 1 0.88600 1.07253 9.06000 AA SS 1 0.92800 0.81606 9.48000 CC -S 1 0.94600 0.63012 9.66000 SS SS 1 0.94500 0.68278 9.65000 TT ST 1 0.95000 0.49011 9.70000 CC ST 1 0.94500 0.66433 9.65000 AA BE 1 0.94600 0.55664 9.66000 GG EE 1 0.94000 0.78689 9.60000 TK EE 1 0.93900 0.72344 9.59000 IL EE 1 0.92300 0.73114 9.43000 TV EE 1 0.90000 1.00490 9.20000 SS EE 1 0.88100 1.19221 9.01000 G S GP ES 1 0.67500 1.63348 6.95000 TA E- 1 0.71800 1.48403 7.38000 IP E- 1 0.84500 0.98880 8.65000 DD EB 1 0.93200 0.52069 9.52000 QE -- 1 0.94400 0.60059 9.64000 SD -S 1 0.92700 0.90571 9.47000 DQ SS 1 0.88000 0.86799 9.00000 QS -S 1 0.73600 1.22353 7.56000 SF S- 1 0.63900 1.49235 6.59000 FL SS 1 0.52900 1.72750 5.49000 LD -S 1 0.52100 1.59463 5.41000 DD -T 1 0.57500 1.64414 5.95000 D H DD HT 0 0.08000 2.20369 1.00000 QQ H- 0 0.37100 1.24825 3.91000 II HT 1 0.81300 1.16318 8.33000 EQ HT 1 0.88400 1.17591 9.04000 AA TT 1 0.91600 0.92677 9.36000 GG TT 1 0.89800 0.97817 9.18000 YY EE 1 0.92100 0.73672 9.41000 VI EE 1 0.94500 0.64730 9.65000 LL -E 1 0.94500 0.74206 9.65000 TT GG 1 0.93800 0.82220 9.58000 CC GG 1 0.92700 0.78941 9.47000 VV GG 1 0.92400 0.77561 9.44000 AA -- 1 0.93700 0.58734 9.57000 YY EB 1 0.92900 0.81364 9.49000 PP E- 1 0.94400 0.67788 9.64000 TT E- 1 0.93700 0.72227 9.57000 SG ES 1 0.90800 0.82935 9.28000 DD ES 1 0.90500 0.94679 9.25000 CC EE 1 0.91700 0.96890 9.37000 TV EE 1 0.94000 0.72483 9.60000 II EE 1 0.94200 0.74673 9.62000 KE EE 1 0.94500 0.44682 9.65000 TT S- 1 0.93800 0.73563 9.58000 HH B- 1 0.91900 0.88048 9.39000 QK T- 1 0.90300 0.94424 9.23000 EE TT 1 0.89600 0.54399 9.16000 EE TT 1 0.80000 1.20294 8.20000 GA TT 1 0.79600 1.23673 8.16000 LL -- 1 0.59900 0.91637 6.19000 *