% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb4cln.ent 4cln { ALL -0.33234 -0.70797 0.62313 40.65637 -0.92582 0.37094 -0.07237 18.53028 -0.17992 -0.60101 -0.77877 70.09071 } /disk3/pdb/pdb3cln.ent 3cln { ALL -0.32699 -0.71897 0.61331 41.15354 -0.93048 0.35823 -0.07617 19.08453 -0.16489 -0.59556 -0.78619 70.06571 } % Reading block file... Blocfile read: Length: 147 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 147 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 147 % The alignment: >4cln (cluster A) sequence >3cln (cluster B) sequence >space >4cln_dssp (cluster A) secondary structure from DSSP >3cln_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * A - D - Q - L - TT -- 1 0.93900 0.79165 9.59000 EE HH 1 0.90700 0.95619 9.27000 EE HH 1 0.92100 0.87036 9.41000 QQ HH 1 0.94200 0.82339 9.62000 II HH 1 0.94300 0.80361 9.63000 AA HH 1 0.94700 0.71762 9.67000 EE HH 1 0.94700 0.68577 9.67000 FF HH 1 0.95100 0.55744 9.71000 KK HH 1 0.95000 0.62631 9.70000 EE HH 1 0.95000 0.62784 9.70000 AA HH 1 0.95100 0.62192 9.71000 FF HH 1 0.95300 0.58405 9.73000 SS HH 1 0.95500 0.52189 9.75000 LL HH 1 0.95800 0.37574 9.78000 FF HH 1 0.95900 0.30064 9.79000 DD -- 1 0.95900 0.34145 9.79000 KK TT 1 0.95700 0.35352 9.77000 DD TT 1 0.95100 0.50060 9.71000 GG -- 1 0.94500 0.63403 9.65000 DD SS 1 0.95300 0.47995 9.73000 GG SS 1 0.95500 0.52707 9.75000 TT EE 1 0.95300 0.53558 9.73000 II EE 1 0.95600 0.40813 9.76000 TT -- 1 0.95800 0.36353 9.78000 TT HH 1 0.95700 0.41694 9.77000 KK HH 1 0.95800 0.34405 9.78000 EE HH 1 0.95800 0.39863 9.78000 LL HH 1 0.95000 0.48833 9.70000 GG HH 1 0.93300 0.73688 9.53000 TT HH 1 0.94300 0.66076 9.63000 VV HH 1 0.95300 0.62705 9.73000 MM HH 1 0.95100 0.66901 9.71000 RR HH 1 0.95300 0.65006 9.73000 SS HH 1 0.94300 0.63524 9.63000 LL TT 1 0.93300 0.80919 9.53000 GG ST 1 0.94900 0.70056 9.69000 QQ -- 1 0.93800 0.74601 9.58000 NN -- 1 0.92800 0.85048 9.48000 PP -- 1 0.93400 0.78064 9.54000 TT -- 1 0.92400 0.83755 9.44000 EE HH 1 0.89800 1.10684 9.18000 AA HH 1 0.87900 1.16256 8.99000 EE HH 1 0.89800 0.98969 9.18000 LL HH 1 0.93600 0.70211 9.56000 QQ HH 1 0.95200 0.55944 9.72000 DD HH 1 0.95600 0.51873 9.76000 MM HH 1 0.95600 0.47719 9.76000 II HH 1 0.95400 0.55936 9.74000 NN HH 1 0.95100 0.61083 9.71000 EE HH 1 0.95400 0.50936 9.74000 VV HH 1 0.95400 0.55406 9.74000 DD -- 1 0.95000 0.51292 9.70000 AA SS 1 0.94300 0.72626 9.63000 DD SS 1 0.93300 0.82771 9.53000 GG -- 1 0.94500 0.53494 9.65000 NN SS 1 0.95600 0.30755 9.76000 GG SS 1 0.94900 0.19761 9.69000 TT -S 1 0.93700 0.74967 9.57000 II EE 1 0.95300 0.59020 9.73000 DD EE 1 0.95300 0.57632 9.73000 FF HH 1 0.95500 0.43239 9.75000 PP HH 1 0.95100 0.59927 9.71000 EE HH 1 0.94900 0.65243 9.69000 FF HH 1 0.95500 0.42856 9.75000 LL HH 1 0.95400 0.53039 9.74000 TT HH 1 0.94700 0.72022 9.67000 MM HH 1 0.92000 0.84531 9.40000 MM HH 1 0.90800 0.91262 9.28000 AA HH 1 0.90300 1.02122 9.23000 RR HH 1 0.92400 0.90360 9.44000 KK HH 1 0.93200 0.87113 9.52000 MM HH 1 0.94700 0.55219 9.67000 KK HH 1 0.95000 0.59827 9.70000 DD HT 1 0.93900 0.82001 9.59000 TT HT 1 0.92600 0.90276 9.46000 DD HT 1 0.92600 0.77952 9.46000 SS HT 1 0.93500 0.67067 9.55000 EE HH 1 0.93100 0.84674 9.51000 EE HH 1 0.94100 0.70695 9.61000 EE HH 1 0.91300 0.95077 9.33000 II HH 1 0.93700 0.61392 9.57000 RR HH 1 0.94600 0.69988 9.66000 EE HH 1 0.94200 0.70150 9.62000 AA HH 1 0.94000 0.68257 9.60000 FF HH 1 0.94200 0.58229 9.62000 RR HH 1 0.91500 0.86895 9.35000 VV HH 1 0.93900 0.43730 9.59000 FF HH 1 0.94900 0.62317 9.69000 DD T- 1 0.94900 0.67626 9.69000 KK TT 1 0.94300 0.81337 9.63000 DD TT 1 0.92400 0.80772 9.44000 GG -- 1 0.87700 1.04282 8.97000 NN SS 1 0.92500 0.65558 9.45000 GG SS 1 0.94300 0.75092 9.63000 FY SE 1 0.93600 0.82708 9.56000 II -E 1 0.94700 0.64795 9.67000 SS -- 1 0.94200 0.57830 9.62000 AA HH 1 0.92900 0.82193 9.49000 AA HH 1 0.93300 0.83835 9.53000 EE HH 1 0.94900 0.51052 9.69000 LL HH 1 0.95600 0.54303 9.76000 RR HH 1 0.95400 0.57387 9.74000 HH HH 1 0.95500 0.46014 9.75000 VV HH 1 0.95600 0.36751 9.76000 MM HH 1 0.94900 0.60794 9.69000 TT HH 1 0.88500 0.34559 9.05000 NN HH 1 0.80400 1.25150 8.24000 LL HT 1 0.78500 1.33058 8.05000 GG TT 1 0.87900 0.67062 8.99000 EE -- 1 0.93400 0.32803 9.54000 KK -- 1 0.90800 0.93595 9.28000 LL -- 1 0.94100 0.77089 9.61000 TT -- 1 0.94100 0.79431 9.61000 DD HH 1 0.94300 0.74974 9.63000 EE HH 1 0.94700 0.74176 9.67000 EE HH 1 0.95000 0.68201 9.70000 VV HH 1 0.95300 0.55696 9.73000 DD HH 1 0.95200 0.57364 9.72000 EE HH 1 0.95600 0.42372 9.76000 MM HH 1 0.95800 0.33244 9.78000 II HH 1 0.95400 0.38554 9.74000 RR HH 1 0.94700 0.68430 9.67000 EE TH 1 0.95100 0.65487 9.71000 AA TH 1 0.95300 0.56721 9.73000 DN -- 1 0.95100 0.45615 9.71000 II SS 1 0.94700 0.59169 9.67000 DD SS 1 0.94700 0.72641 9.67000 GG -- 1 0.94700 0.69459 9.67000 DD SS 1 0.93600 0.77239 9.56000 GG SS 1 0.93600 0.82150 9.56000 QQ SS 1 0.94800 0.73231 9.68000 VV -E 1 0.94300 0.65782 9.63000 NN -E 1 0.93700 0.75022 9.57000 YY HH 1 0.94700 0.71352 9.67000 EE HH 1 0.95300 0.60589 9.73000 EE HH 1 0.95600 0.49255 9.76000 FF HH 1 0.95600 0.48606 9.76000 VV HH 1 0.95000 0.55959 9.70000 TQ HH 1 0.93900 0.78885 9.59000 MM HH 1 0.92600 0.75345 9.46000 MM TH 1 0.83600 1.02177 8.56000 TT TT 1 0.77800 1.32300 7.98000 S T *