% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb3sic.ent 3sici { CHAIN I 0.99997 0.00814 -0.00294 0.04656 -0.00814 0.99996 -0.00052 0.00240 0.00294 0.00053 0.99999 -0.14791 } /disk3/pdb/pdb2sic.ent 2sici { CHAIN I 1.00000 0.00004 0.00000 -0.00067 -0.00004 1.00000 -0.00002 0.00029 0.00000 0.00002 1.00000 -0.00054 } % Reading block file... Blocfile read: Length: 106 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 106 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 106 % The alignment: >3sici (cluster A) sequence >2sici (cluster B) sequence >space >3sici_dssp (cluster A) secondary structure from DSSP >2sici_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * YY -- 1 0.94400 0.70688 9.64000 AA -- 1 0.95000 0.46301 9.70000 PP -- 1 0.95600 0.48592 9.76000 SS -- 1 0.95600 0.46398 9.76000 AA EE 1 0.95700 0.40372 9.77000 LL EE 1 0.95800 0.23128 9.78000 VV EE 1 0.95800 0.40236 9.78000 LL EE 1 0.95800 0.37861 9.78000 TT EE 1 0.95900 0.35046 9.79000 VV EE 1 0.95500 0.43493 9.75000 GG EE 1 0.95300 0.57284 9.73000 KK EE 1 0.95400 0.56069 9.74000 GG SS 1 0.95600 0.42285 9.76000 VV SS 1 0.95800 0.41071 9.78000 SS SS 1 0.95800 0.34580 9.78000 AA TT 1 0.95400 0.53841 9.74000 TT TT 1 0.95500 0.46828 9.75000 TT SS 1 0.95300 0.51692 9.73000 AA SS 1 0.95500 0.07636 9.75000 AA -- 1 0.95400 0.51179 9.74000 PP -- 1 0.95500 0.53724 9.75000 EE -- 1 0.95700 0.38008 9.77000 RR EE 1 0.95800 0.30461 9.78000 AA EE 1 0.95900 0.18919 9.79000 VV EE 1 0.95900 0.31487 9.79000 TT EE 1 0.95800 0.22908 9.78000 LL EE 1 0.95600 0.44548 9.76000 TT EE 1 0.95700 0.35926 9.77000 CC -- 1 0.95400 0.48013 9.74000 AA SS 1 0.95100 0.52490 9.71000 PP SS 1 0.94100 0.74236 9.61000 GG SS 1 0.94900 0.59159 9.69000 PP -- 1 0.94500 0.73310 9.65000 SS EE 1 0.94700 0.66338 9.67000 GG EE 1 0.94800 0.64004 9.68000 TT ES 1 0.95100 0.63810 9.71000 HH -- 1 0.94600 0.68065 9.66000 PP TT 1 0.95000 0.57271 9.70000 AA TT 1 0.95700 0.31257 9.77000 AA HH 1 0.95700 0.45374 9.77000 GG HH 1 0.95800 0.39406 9.78000 SS HH 1 0.95800 0.40913 9.78000 AA HH 1 0.95800 0.36494 9.78000 CC HH 1 0.95600 0.43735 9.76000 AA HH 1 0.95300 0.57135 9.73000 DD HH 1 0.95200 0.60637 9.72000 LL HH 1 0.95500 0.39770 9.75000 AA HH 1 0.95600 0.49357 9.76000 AA HH 1 0.95800 0.43040 9.78000 VV HH 1 0.95700 0.44751 9.77000 GG TT 1 0.95600 0.49303 9.76000 GG TT 1 0.95200 0.60413 9.72000 DD -- 1 0.95700 0.32890 9.77000 LL TT 1 0.95900 0.37558 9.79000 NN TT 1 0.95500 0.44424 9.75000 AA -- 1 0.95100 0.60171 9.71000 LL -- 1 0.95500 0.50857 9.75000 TT -- 1 0.95600 0.49244 9.76000 RR -- 1 0.95400 0.56070 9.74000 GG -- 1 0.94400 0.69010 9.64000 EE SS 1 0.94600 0.58405 9.66000 DD SS 1 0.95600 0.35719 9.76000 VV EE 1 0.95800 0.35048 9.78000 MM EE 1 0.95700 0.45696 9.77000 CC EE 1 0.95700 0.41817 9.77000 PP EE 1 0.95700 0.39883 9.77000 KM -- 1 0.95800 0.42597 9.78000 VV B- 1 0.95800 0.36441 9.78000 YY -- 1 0.95900 0.31602 9.79000 DD -- 1 0.95900 0.34150 9.79000 PP -- 1 0.95800 0.38156 9.78000 VV EE 1 0.95800 0.31972 9.78000 LL EE 1 0.95900 0.27828 9.79000 LL EE 1 0.95800 0.31488 9.78000 TT EE 1 0.95700 0.46061 9.77000 VV EE 1 0.95800 0.38842 9.78000 DD EE 1 0.95800 0.43366 9.78000 GG EE 1 0.95700 0.41900 9.77000 VV EE 1 0.95800 0.33520 9.78000 WW EE 1 0.95800 0.35513 9.78000 QQ TT 1 0.95700 0.41441 9.77000 GG TT 1 0.95900 0.23751 9.79000 KK EE 1 0.95900 0.28273 9.79000 RR EE 1 0.95900 0.16615 9.79000 VV EE 1 0.95800 0.38223 9.78000 SS EE 1 0.95900 0.22695 9.79000 YY EE 1 0.95900 0.29070 9.79000 EE EE 1 0.95800 0.37418 9.78000 RR EE 1 0.95900 0.28382 9.79000 VV EE 1 0.95900 0.29018 9.79000 FF EE 1 0.95700 0.44398 9.77000 SS SS 1 0.95700 0.45999 9.77000 NN SS 1 0.95800 0.36608 9.78000 EE HH 1 0.95900 0.32651 9.79000 CC HH 1 0.95800 0.39672 9.78000 EE HH 1 0.95900 0.30370 9.79000 MM HH 1 0.95800 0.37578 9.78000 NN HH 1 0.95800 0.39614 9.78000 AA TT 1 0.95700 0.42207 9.77000 HH TT 1 0.95700 0.36004 9.77000 GG SS 1 0.95700 0.37258 9.77000 SS SS 1 0.95700 0.46951 9.77000 SS SS 1 0.95700 0.46869 9.77000 VV ST 1 0.95800 0.40702 9.78000 FF ST 1 0.95700 0.41002 9.77000 AA -- 1 0.95600 0.52241 9.76000 *