% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb2cro.ent 2cro { ALL -0.66720 -0.19372 0.71927 14.70014 -0.74393 0.12470 -0.65653 53.18946 0.03750 -0.97313 -0.22731 21.64720 } /disk3/pdb/pdb1r69.ent 1r69 { ALL -0.13547 0.98874 0.06371 13.91437 0.75311 0.14452 -0.64181 54.68574 -0.64382 -0.03902 -0.76421 30.33928 } % Reading block file... Blocfile read: Length: 64 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 64 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 64 % The alignment: >2cro (cluster A) sequence >1r69 (cluster B) sequence >space >2cro_dssp (cluster A) secondary structure from DSSP >1r69_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * M - Q - TS S- 1 0.91300 0.97492 9.33000 LI HH 1 0.91500 0.89346 9.35000 SS HH 1 0.94600 0.66235 9.66000 ES HH 1 0.95200 0.66223 9.72000 RR HH 1 0.95000 0.70731 9.70000 LV HH 1 0.94900 0.66590 9.69000 KK HH 1 0.94100 0.70493 9.61000 KS HH 1 0.93700 0.74453 9.57000 RK HH 1 0.93900 0.76446 9.59000 RR HH 1 0.93600 0.85287 9.56000 II HH 1 0.93900 0.79534 9.59000 AQ HH 1 0.93100 0.88863 9.51000 LL TT 1 0.94200 0.78270 9.62000 KG TT 1 0.93300 0.80632 9.53000 ML -- 1 0.94000 0.52337 9.60000 TN -- 1 0.93900 0.72756 9.59000 QQ HH 1 0.94700 0.67255 9.67000 TA HH 1 0.94800 0.74466 9.68000 EE HH 1 0.95000 0.69328 9.70000 LL HH 1 0.95100 0.62048 9.71000 AA HH 1 0.94300 0.77511 9.63000 TQ HH 1 0.94400 0.74192 9.64000 KK HH 1 0.93000 0.89642 9.50000 AV HH 1 0.92000 0.97191 9.40000 GG TT 1 0.93300 0.85954 9.53000 VT SS 1 0.91500 1.00666 9.35000 KT -- 1 0.91200 1.03325 9.32000 QQ HH 1 0.90200 1.08299 9.22000 QQ HH 1 0.93000 0.84471 9.50000 SS HH 1 0.93700 0.75406 9.57000 II HH 1 0.93900 0.72049 9.59000 QE HH 1 0.95300 0.47684 9.73000 LQ HH 1 0.95700 0.28312 9.77000 IL HH 1 0.95600 0.44997 9.76000 EE HH 1 0.95000 0.23483 9.70000 AN TT 1 0.93500 0.70777 9.55000 GG TT 1 0.93800 0.75728 9.58000 VK -S 1 0.94700 0.71949 9.67000 TT -- 1 0.91500 0.67451 9.35000 KK SS 1 0.85200 1.20750 8.72000 RR SS 1 0.85100 1.17451 8.71000 PP -- 1 0.80700 1.24362 8.27000 RR TT 1 0.82600 1.20503 8.46000 FF TT 1 0.89400 0.73956 9.14000 LL HH 1 0.91000 0.93664 9.30000 FP HH 1 0.92600 0.86805 9.46000 EE HH 1 0.92700 0.68427 9.47000 IL HH 1 0.91500 0.96265 9.35000 AA HH 1 0.90800 0.99603 9.28000 MS HH 1 0.92200 0.86442 9.42000 AA HH 1 0.94000 0.80063 9.60000 LL TT 1 0.93900 0.81437 9.59000 NG TT 1 0.92600 0.96924 9.46000 CV S- 1 0.92900 0.90930 9.49000 DS -- 1 0.91700 0.84543 9.37000 PV HH 1 0.88800 1.10725 9.08000 VD HH 1 0.88500 1.09475 9.05000 WW HH 1 0.91500 0.84471 9.35000 LL HH 1 0.92700 0.86015 9.47000 QL HH 1 0.89100 1.08889 9.11000 YN HH 1 0.89800 1.06695 9.18000 GG -- 1 0.92400 0.92805 9.44000 *