% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1puc.ent 1puc { ALL 0.96794 -0.23216 -0.09599 -36.38766 0.25006 0.92699 0.27956 11.47201 0.02408 -0.29459 0.95533 -18.19664 } /disk3/pdb/pdb1cks.ent 1cksa { CHAIN A 0.81378 -0.02431 0.58069 -58.51354 -0.26093 -0.90805 0.32762 73.54070 0.51932 -0.41813 -0.74531 35.45652 } % Reading block file... Blocfile read: Length: 102 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 102 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 101 % The alignment: >1puc (cluster A) sequence >1cksa (cluster B) sequence >space >1puc_dssp (cluster A) secondary structure from DSSP >1cksa_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * S - K - S - G - V - P - R - L - L - T - A H S H E H R H E H R T L T E H P H FA H- IH H- DK T- 0 0.13300 1.96068 1.53000 QQ T- 1 0.60100 0.66157 6.21000 II -- 1 0.94100 0.63942 9.61000 HY EE 1 0.93800 0.74949 9.58000 YY EE 1 0.95100 0.56770 9.71000 SS -- 1 0.95000 0.65295 9.70000 PD -- 1 0.95600 0.42211 9.76000 RK -- 1 0.95800 0.37637 9.78000 YY EE 1 0.95300 0.49128 9.73000 AF EE 1 0.94000 0.72343 9.60000 DD -- 1 0.95200 0.34494 9.72000 DE SS 1 0.95500 0.50000 9.75000 EH SS 1 0.95700 0.41470 9.77000 YY -- 1 0.95700 0.39800 9.77000 EE EE 1 0.95800 0.36079 9.78000 YY EE 1 0.95700 0.32765 9.77000 RR -- 1 0.94200 0.54938 9.62000 HH -- 1 0.92700 0.83862 9.47000 VV EE 1 0.95000 0.65149 9.70000 MM EE 1 0.94200 0.67090 9.62000 LL -- 1 0.91400 0.69551 9.34000 PP -- 1 0.89900 0.94960 9.19000 KR HH 1 0.77900 1.06783 7.99000 AE HH 1 0.60800 1.64405 6.28000 ML HH 1 0.63400 1.51565 6.54000 LS HH 1 0.52600 1.61694 5.46000 KK TH 0 0.39700 2.00115 4.17000 A T I S P - T G DQ GT 0 0.04900 2.76155 0.69000 YV GS 0 0.25700 2.13405 2.77000 FP B- 1 0.62000 1.60872 6.40000 NK -S P T E T T T G S T S LT BS RH -S 0 0.25900 1.73430 2.79000 IL -- 1 0.71900 0.61148 7.39000 LM -- 1 0.94200 0.71883 9.62000 QS -- 1 0.95200 0.49678 9.72000 EE HH 1 0.95400 0.44277 9.74000 EE HH 1 0.94400 0.70719 9.64000 EE HH 1 0.93700 0.77958 9.57000 WW HH 1 0.93800 0.53569 9.58000 RR HH 1 0.92800 0.76006 9.48000 GR HH 1 0.91900 0.90234 9.39000 LL TH 1 0.93800 0.75323 9.58000 GG TT 1 0.94300 0.80422 9.63000 IV -- 1 0.94500 0.66797 9.65000 TQ -- 1 0.93600 0.81033 9.56000 QQ -- 1 0.92500 0.68014 9.45000 SS -- 1 0.84400 1.03660 8.64000 LL ST 1 0.72700 1.49675 7.47000 GG ST 1 0.83800 1.16898 8.58000 WW -- 1 0.91800 0.66028 9.38000 EV -- 1 0.95300 0.52434 9.73000 MH -- 1 0.94300 0.60638 9.63000 YY -- 1 0.89900 0.93268 9.19000 M B EI -- 0 0.40900 1.84416 4.29000 VH -- 0 0.10100 2.41312 1.21000 HE -- 0 0.09900 2.46297 1.19000 VP -- 0 0.33300 1.66868 3.53000 PE -- 1 0.75400 1.28441 7.74000 EP -- 1 0.61100 1.15242 6.31000 PH T- 0 0.39600 1.91762 4.16000 HI T- 0 0.38100 2.07250 4.01000 IL -- 0 0.09900 2.55763 1.19000 LL -- 0 0.05000 2.74373 0.70000 LF -- 0 0.42300 1.99051 4.43000 FR -- 1 0.44900 2.04970 4.69000 KR -- 0 0.40700 1.85521 4.27000 RP -- 0 0.16300 2.12312 1.83000 EL -- 1 0.57700 1.81306 5.97000 KP -- 0 0.30700 1.79441 3.27000 *