% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1pk4.ent 1pk4 { ALL -0.03281 0.41559 0.90893 17.17456 0.72142 -0.61959 0.30932 5.11541 0.69175 0.66587 -0.27951 2.28022 } /disk3/pdb/pdb1cea.ent 1ceaa { CHAIN A -0.91678 0.38362 0.11099 58.08331 0.18658 0.16571 0.96838 22.67533 0.35310 0.90851 -0.22350 -8.15312 } % Reading block file... Blocfile read: Length: 79 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 79 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 79 % The alignment: >1pk4 (cluster A) sequence >1ceaa (cluster B) sequence >space >1pk4_dssp (cluster A) secondary structure from DSSP >1ceaa_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * DE -- 1 0.57800 1.80434 5.98000 CC E- 1 0.66800 1.37252 6.88000 YK EB 1 0.84900 0.69420 8.69000 HT -- 1 0.91800 0.81672 9.38000 GG TT 1 0.88300 1.08439 9.03000 DN TT 1 0.89000 1.08113 9.10000 GG S- 1 0.92500 0.74623 9.45000 QK TT 1 0.92300 0.86388 9.43000 SN TT 1 0.93900 0.67932 9.59000 YY -- 1 0.94700 0.70752 9.67000 RR -- 1 0.94200 0.73278 9.62000 GG -- 1 0.93800 0.78571 9.58000 TT -- 1 0.93200 0.86353 9.52000 SM -- 1 0.90900 0.85539 9.29000 SS -- 1 0.90800 0.87164 9.28000 TK BB 1 0.92300 0.87157 9.43000 TT B- 1 0.94300 0.52345 9.63000 TK TT 1 0.94800 0.61157 9.68000 TN TT 1 0.94900 0.63462 9.69000 GG SS 1 0.95500 0.52530 9.75000 KI -- 1 0.95500 0.42017 9.75000 KT BB 1 0.95000 0.64397 9.70000 CC BB 1 0.94300 0.74628 9.63000 QQ -- 1 0.95100 0.49265 9.71000 SK -- 1 0.95500 0.50216 9.75000 WW TT 1 0.95400 0.39915 9.74000 SS TT 1 0.94800 0.69222 9.68000 SS -- 1 0.95000 0.71622 9.70000 MT -- 1 0.93700 0.79631 9.57000 TS SS 1 0.94900 0.39305 9.69000 PP SS 1 0.94900 0.46707 9.69000 HH SS 1 0.92100 0.80446 9.41000 RR -- 1 0.87200 1.00775 8.92000 HP -- 1 0.80500 1.34582 8.25000 QR SS 1 0.75900 1.37633 7.79000 KF -S 1 0.83700 0.82088 8.57000 TS -- 1 0.87000 0.99261 8.90000 PP TT 1 0.88500 0.89712 9.05000 EA TT 1 0.81600 1.26969 8.36000 NT TT 1 0.89200 0.92692 9.12000 YH -- 1 0.92600 0.76182 9.46000 PP TG 1 0.87900 1.12280 8.99000 NS TG 1 0.92100 0.86033 9.41000 AE SG 1 0.94400 0.62690 9.64000 GG -- 1 0.95100 0.53131 9.71000 LL -- 1 0.93600 0.77238 9.56000 TE -- 1 0.92500 0.89536 9.45000 ME TT 1 0.94700 0.62867 9.67000 NN TT 1 0.95300 0.60010 9.73000 YY -- 1 0.95600 0.48239 9.76000 CC -- 1 0.95300 0.55249 9.73000 RR BB 1 0.94700 0.68480 9.67000 NN -- 1 0.94200 0.80426 9.62000 PP TT 1 0.93600 0.77635 9.56000 DD TT 1 0.89400 1.02618 9.14000 AN -- 1 0.86300 1.14014 8.83000 DD -- 1 0.82600 0.91531 8.46000 P T KQ ST 0 0.40000 1.70425 4.20000 GG S- 1 0.79500 0.92896 8.15000 PP -- 1 0.93900 0.79505 9.59000 WW EE 1 0.94600 0.68836 9.66000 CC EE 1 0.94700 0.63131 9.67000 FY EE 1 0.94400 0.71571 9.64000 TT BB 1 0.94900 0.57391 9.69000 TT SS 1 0.93600 0.68207 9.56000 DD S- 1 0.92500 0.87097 9.45000 PP TT 1 0.92200 0.97998 9.42000 SE TT 1 0.90700 1.05622 9.27000 VK -- 1 0.93500 0.80053 9.55000 RR -- 1 0.94300 0.80557 9.63000 WY EE 1 0.94800 0.72955 9.68000 ED EE 1 0.94700 0.66870 9.67000 YY EE 1 0.94400 0.62059 9.64000 CC B- 1 0.83200 0.76773 8.52000 ND S- 1 0.67200 1.46071 6.92000 LI -- 1 0.80500 1.17135 8.25000 KL E- 1 0.78000 1.42681 8.00000 KE EB 1 0.79900 1.45894 8.19000 *