% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1opr.ent 1opr { ALL 0.35795 -0.36459 0.85963 27.56047 0.73822 0.67421 -0.02144 -39.72423 -0.57177 0.64227 0.51049 33.20425 } /disk3/pdb/pdb1oro.ent 1oroa { CHAIN A 1.00000 0.00007 0.00001 -0.00224 -0.00007 1.00000 0.00003 -0.00945 -0.00001 -0.00003 1.00000 -0.00026 } % Reading block file... Blocfile read: Length: 219 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 219 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 212 % The alignment: >1opr (cluster A) sequence >1oroa (cluster B) sequence >space >1opr_dssp (cluster A) secondary structure from DSSP >1oroa_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * MM -- 1 0.92500 0.87459 9.45000 KK -- 1 0.93500 0.47328 9.55000 PP HH 1 0.93300 0.79825 9.53000 YY HH 1 0.95000 0.54918 9.70000 QQ HH 1 0.95400 0.44090 9.74000 RR HH 1 0.94400 0.68113 9.64000 QQ HH 1 0.95100 0.48339 9.71000 FF HH 1 0.95500 0.51156 9.75000 II HH 1 0.95800 0.31524 9.78000 EE HH 1 0.95600 0.43527 9.76000 FF HH 1 0.95100 0.64603 9.71000 AA HH 1 0.95600 0.53366 9.76000 LL HH 1 0.95600 0.49445 9.76000 NS HH 1 0.94900 0.63367 9.69000 KK TT 1 0.94800 0.51136 9.68000 QQ TT 1 0.93300 0.81060 9.53000 VV -S 1 0.94700 0.62032 9.67000 LL EE 1 0.94700 0.64382 9.67000 KK EE 1 0.93600 0.65146 9.56000 FF EE 1 0.91000 0.98656 9.30000 GG EE 1 0.90200 1.09172 9.22000 EE EE 1 0.90400 1.04956 9.24000 FF EE 1 0.91000 0.96833 9.30000 TT EE 1 0.89400 1.13001 9.14000 LL -- 1 0.89900 1.12744 9.19000 KK TT 1 0.89100 1.15901 9.11000 SS TT 1 0.91100 1.03422 9.31000 GG SS 1 0.91500 1.02424 9.35000 RR -- 1 0.92600 0.92858 9.46000 KK EE 1 0.91700 0.98094 9.37000 SS EE 1 0.93800 0.82659 9.58000 PP EE 1 0.92700 0.91769 9.47000 YY EE 1 0.93600 0.61312 9.56000 FF EE 1 0.92800 0.79431 9.48000 FF EE 1 0.94700 0.50108 9.67000 NN -- 1 0.94600 0.69381 9.66000 AA GG 1 0.94400 0.76061 9.64000 GG GG 1 0.92600 0.87252 9.46000 LL GG 1 0.94600 0.51580 9.66000 FF -- 1 0.95500 0.51690 9.75000 NN -- 1 0.95200 0.56229 9.72000 TT SB 1 0.95400 0.40111 9.74000 GG HH 1 0.95100 0.60379 9.71000 RR HH 1 0.95600 0.41537 9.76000 DD HH 1 0.95600 0.46133 9.76000 LL HH 1 0.95300 0.58929 9.73000 AA HH 1 0.95600 0.50844 9.76000 LL HH 1 0.95200 0.59724 9.72000 LL HH 1 0.95500 0.43565 9.75000 GG HH 1 0.95700 0.51660 9.77000 RR HH 1 0.95600 0.53470 9.76000 FF HH 1 0.95700 0.44655 9.77000 YY HH 1 0.95400 0.57084 9.74000 AA HH 1 0.95700 0.45037 9.77000 EE HH 1 0.95800 0.45088 9.78000 AA HH 1 0.95800 0.41538 9.78000 LL HH 1 0.95600 0.48857 9.76000 VV HH 1 0.95500 0.54885 9.75000 DD HH 1 0.95800 0.41987 9.78000 SS HH 1 0.95700 0.31867 9.77000 GG TT 1 0.95400 0.51879 9.74000 II -- 1 0.95600 0.45627 9.76000 EE -- 1 0.95700 0.37184 9.77000 FF -- 1 0.95700 0.42483 9.77000 DD SS 1 0.95700 0.40426 9.77000 LL EE 1 0.95500 0.50135 9.75000 LL EE 1 0.95600 0.48069 9.76000 FF EE 1 0.95600 0.51667 9.76000 GG EE 1 0.95300 0.62831 9.73000 PP -- 1 0.89600 0.56071 9.16000 AA TT 1 0.76200 1.26896 7.82000 YY TT 1 0.89100 0.50533 9.11000 KK TT 1 0.95400 0.59372 9.74000 GG HH 1 0.94700 0.66223 9.67000 II HH 1 0.94700 0.66704 9.67000 PP HH 1 0.94700 0.68618 9.67000 II HH 1 0.95500 0.43172 9.75000 AA HH 1 0.95800 0.39643 9.78000 TT HH 1 0.95800 0.33919 9.78000 TT HH 1 0.95800 0.33912 9.78000 TT HH 1 0.95900 0.26911 9.79000 AA HH 1 0.95900 0.33178 9.79000 VV HH 1 0.95900 0.25232 9.79000 AA HH 1 0.95900 0.32832 9.79000 LL HH 1 0.95600 0.38004 9.76000 AA HH 1 0.94900 0.63776 9.69000 EE HH 1 0.94700 0.64154 9.67000 HH HH 1 0.92500 0.84663 9.45000 HH SH 1 0.94000 0.65273 9.60000 DD -- 1 0.95300 0.63198 9.73000 KL -- 1 0.95300 0.63068 9.73000 DD -- 1 0.94500 0.70637 9.65000 LL -- 1 0.94900 0.52216 9.69000 PP -B 1 0.95300 0.31716 9.73000 YY EE 1 0.95100 0.59450 9.71000 CC EE 1 0.95600 0.50035 9.76000 FF EE 1 0.95700 0.46067 9.77000 NN EE 1 0.95800 0.28728 9.78000 RR -- 1 0.93400 0.42678 9.54000 KK -S 1 0.86700 0.99534 8.87000 EE -S AA -- KK -- DD SS HH SS GG SS EE -S GG -- GG -T 0 0.00000 2.43231 0.01000 SN -T 0 0.32400 0.75004 3.44000 LL EE 1 0.94700 0.71996 9.67000 VV EE 1 0.95300 0.58328 9.73000 GG EE 1 0.95500 0.52886 9.75000 SS SS 1 0.94800 0.61795 9.68000 AA -- 1 0.93000 0.85944 9.50000 LL S- 1 0.93800 0.76410 9.58000 QQ -- 1 0.94700 0.64237 9.67000 GG SS 1 0.95500 0.40493 9.75000 RR EE 1 0.95700 0.42896 9.77000 VV EE 1 0.95800 0.40927 9.78000 MM EE 1 0.95800 0.42179 9.78000 LL EE 1 0.95300 0.51837 9.73000 VV EE 1 0.94900 0.58666 9.69000 DD -- 1 0.95600 0.42730 9.76000 DD SS 1 0.95200 0.41023 9.72000 VV B- 1 0.93800 0.74212 9.58000 II -- 1 0.92600 0.88235 9.46000 TT S- 1 0.91600 0.78615 9.36000 AA S- 1 0.78300 1.04787 8.03000 GG SG 1 0.62200 1.65052 6.42000 TT -G 1 0.74900 1.37416 7.69000 AA HG 1 0.69400 1.48738 7.14000 II HG 1 0.86200 1.03270 8.82000 RR HH 1 0.88800 1.08639 9.08000 EE HH 1 0.87600 1.06731 8.96000 SS HH 1 0.91600 0.78355 9.36000 MM HH 1 0.93500 0.78843 9.55000 EE HH 1 0.91900 0.88438 9.39000 II HH 1 0.94000 0.56649 9.60000 II HH 1 0.94900 0.30769 9.69000 QQ HH 1 0.93800 0.73988 9.58000 AA HH 1 0.93400 0.75022 9.54000 HN HT 1 0.94100 0.57036 9.61000 GG TT 1 0.93600 0.75575 9.56000 AA -- 1 0.95000 0.34606 9.70000 TT EE 1 0.95300 0.55539 9.73000 LL EE 1 0.95500 0.48496 9.75000 AA EE 1 0.95300 0.57202 9.73000 GG EE 1 0.95600 0.47722 9.76000 VV EE 1 0.95600 0.38319 9.76000 LL EE 1 0.95300 0.55562 9.73000 II EE 1 0.95400 0.45463 9.74000 SS EE 1 0.95500 0.51518 9.75000 LL EE 1 0.95700 0.42886 9.77000 DD EE 1 0.95600 0.51496 9.76000 RR -- 1 0.95400 0.54099 9.74000 QQ -- 1 0.95400 0.54282 9.74000 EE BB 1 0.94900 0.54117 9.69000 RR -- 1 0.93500 0.75616 9.55000 GG -- 1 0.91600 1.00628 9.36000 RR SS 1 0.92400 0.98607 9.44000 GG SS 1 0.91200 0.96087 9.32000 EE SS 1 0.92700 0.78199 9.47000 II SS 1 0.93700 0.80745 9.57000 SS -- 1 0.94200 0.58272 9.62000 AA HH 1 0.93200 0.82881 9.52000 II HH 1 0.93800 0.75795 9.58000 QQ HH 1 0.95000 0.47660 9.70000 EE HH 1 0.94400 0.60486 9.64000 VV HH 1 0.92700 0.85734 9.47000 EE HH 1 0.93900 0.79060 9.59000 RR HH 1 0.94500 0.71054 9.65000 DD HH 1 0.94300 0.73577 9.63000 YY HH 1 0.94100 0.82346 9.61000 GN TT 1 0.94100 0.84914 9.61000 CC -- 1 0.93700 0.86864 9.57000 KK EE 1 0.92700 0.87898 9.47000 VV EE 1 0.94700 0.49536 9.67000 II EE 1 0.95300 0.54029 9.73000 SS EE 1 0.95200 0.52345 9.72000 II EE 1 0.95700 0.29580 9.77000 II EE 1 0.95500 0.36039 9.75000 TT EE 1 0.95400 0.53154 9.74000 LL HH 1 0.95500 0.55854 9.75000 KK HH 1 0.95500 0.51211 9.75000 DD HH 1 0.94700 0.65635 9.67000 LL HH 1 0.94900 0.59496 9.69000 II HH 1 0.95200 0.60749 9.72000 AA HH 1 0.95600 0.48712 9.76000 YY HH 1 0.95700 0.40869 9.77000 LL HH 1 0.95400 0.56902 9.74000 EE TT 1 0.95600 0.49919 9.76000 EE TT 1 0.95400 0.56569 9.74000 KK -- 1 0.95100 0.38011 9.71000 PP GG 1 0.94000 0.74700 9.60000 DE GG 1 0.93100 0.90120 9.51000 MM GG 1 0.93800 0.77452 9.58000 AA HH 1 0.94500 0.55761 9.65000 EE HH 1 0.94500 0.70337 9.65000 HH HH 1 0.95400 0.60679 9.74000 LL HH 1 0.95100 0.63988 9.71000 AA HH 1 0.95400 0.54407 9.74000 AA HH 1 0.95600 0.48391 9.76000 VV HH 1 0.95400 0.54408 9.74000 RK HH 1 0.94900 0.69702 9.69000 AA HH 1 0.95000 0.65360 9.70000 YY HH 1 0.95300 0.45458 9.73000 RR HH 1 0.94900 0.67068 9.69000 EE HH 1 0.94800 0.71670 9.68000 EE HH 1 0.94400 0.77683 9.64000 FF HH 1 0.93800 0.83592 9.58000 GG BB 1 0.94100 0.68400 9.61000 *