% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1mrj.ent 1mrj { ALL 0.35347 -0.09398 -0.93072 51.38088 0.72403 -0.60251 0.33579 -6.16909 -0.59235 -0.79257 -0.14492 -4.39408 } /disk3/pdb/pdb1mrg.ent 1mrg { ALL -0.17758 -0.96597 0.18811 125.05539 0.43014 0.09571 0.89765 -5.94581 -0.88514 0.24031 0.39850 6.06785 } % Reading block file... Blocfile read: Length: 246 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 246 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 246 % The alignment: >1mrj (cluster A) sequence >1mrg (cluster B) sequence >space >1mrj_dssp (cluster A) secondary structure from DSSP >1mrg_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * DD -- 1 0.95500 0.57069 9.75000 VV EE 1 0.95700 0.49324 9.77000 SS EE 1 0.95800 0.41863 9.78000 FF EE 1 0.95900 0.30791 9.79000 RR EE 1 0.95900 0.36141 9.79000 LL -S 1 0.95600 0.38897 9.76000 SS TS 1 0.94800 0.65172 9.68000 GG TS 1 0.94100 0.75914 9.61000 AA -- 1 0.94700 0.53940 9.67000 TD -- 1 0.94500 0.66850 9.65000 SP HH 1 0.95500 0.49215 9.75000 SR HH 1 0.95500 0.51491 9.75000 SS HH 1 0.95600 0.44640 9.76000 YY HH 1 0.95700 0.36754 9.77000 GG HH 1 0.95700 0.43268 9.77000 VM HH 1 0.95700 0.40715 9.77000 FF HH 1 0.95600 0.45354 9.76000 II HH 1 0.95600 0.46909 9.76000 SK HH 1 0.95500 0.54174 9.75000 ND HH 1 0.95700 0.46222 9.77000 LL HH 1 0.95600 0.40313 9.76000 RR HH 1 0.95100 0.60116 9.71000 KN HH 1 0.94800 0.69890 9.68000 AA TH 1 0.94800 0.63753 9.68000 LL SS 1 0.95200 0.48006 9.72000 PP -- 1 0.95500 0.53040 9.75000 NF EE 1 0.95400 0.56739 9.74000 ER EE 1 0.95600 0.46700 9.76000 RE EE 1 0.95300 0.57588 9.73000 KK EE 1 0.94600 0.63989 9.66000 LV EE 1 0.93300 0.84207 9.53000 YY TT 1 0.93200 0.90574 9.52000 DN TT 1 0.93800 0.81148 9.58000 II EE 1 0.95100 0.52663 9.71000 PP EE 1 0.95400 0.54593 9.74000 LL EE 1 0.95700 0.28953 9.77000 LL EE 1 0.95800 0.37517 9.78000 RL -- 1 0.95900 0.29887 9.79000 SP SS 1 0.94900 0.39102 9.69000 SS -- 1 0.93700 0.77477 9.57000 LV -- 1 0.93500 0.80300 9.55000 PS -- 1 0.91100 0.88671 9.31000 GG HG 1 0.82700 1.19154 8.47000 SA HG 1 0.67000 1.55913 6.90000 QG HG 1 0.79300 1.14626 8.13000 RR HG 1 0.91700 0.50818 9.37000 YY EE 1 0.95300 0.58060 9.73000 AL EE 1 0.94400 0.70613 9.64000 LL EE 1 0.95200 0.40831 9.72000 IM EE 1 0.95600 0.48549 9.76000 HH EE 1 0.95500 0.53473 9.75000 LL EE 1 0.95500 0.47015 9.75000 TF EE 1 0.95500 0.56766 9.75000 NN -- 1 0.95000 0.53253 9.70000 YR TT 1 0.91800 0.83300 9.38000 AD TT 1 0.87200 1.12441 8.92000 DG -- 1 0.90200 0.96569 9.22000 EK -- 1 0.90300 0.90775 9.23000 TT EE 1 0.93700 0.32536 9.57000 II EE 1 0.95800 0.42166 9.78000 ST EE 1 0.95600 0.50968 9.76000 VV EE 1 0.95700 0.31977 9.77000 AA EE 1 0.95700 0.41962 9.77000 IV EE 1 0.95600 0.51731 9.76000 DD EE 1 0.95600 0.48357 9.76000 VV TT 1 0.95800 0.34246 9.78000 TT TT 1 0.95700 0.44103 9.77000 NN TT 1 0.95800 0.30211 9.78000 VI TT 1 0.95600 0.42006 9.76000 YY EE 1 0.95600 0.49280 9.76000 II EE 1 0.95700 0.50457 9.77000 MM EE 1 0.95700 0.46673 9.77000 GG EE 1 0.95500 0.48948 9.75000 YY EE 1 0.95600 0.48028 9.76000 RL EE 1 0.95600 0.52459 9.76000 AA EE 1 0.95500 0.47248 9.75000 GD TT 1 0.95500 0.51174 9.75000 DT TT 1 0.95600 0.50970 9.76000 TT EE 1 0.95800 0.31488 9.78000 SS EE 1 0.95600 0.37826 9.76000 YY EE 1 0.95200 0.52182 9.72000 FF EE 1 0.95600 0.45652 9.76000 FF -- 1 0.95600 0.51907 9.76000 NN SS 1 0.95300 0.59604 9.73000 EE SS 1 0.94800 0.64173 9.68000 AP HH 1 0.94800 0.64013 9.68000 SA HH 1 0.95300 0.62753 9.73000 AA HH 1 0.95400 0.53080 9.74000 TE HH 1 0.95000 0.66601 9.70000 EL HH 1 0.94800 0.67436 9.68000 AA HH 1 0.95200 0.54211 9.72000 AS TT 1 0.95700 0.52029 9.77000 KQ TT 1 0.95600 0.56059 9.76000 YY TT 1 0.95600 0.51361 9.76000 VV SS 1 0.95500 0.57985 9.75000 FF S- 1 0.95600 0.48171 9.76000 KR TT 1 0.95100 0.60036 9.71000 DD TT 1 0.95400 0.47420 9.74000 AA -- 1 0.95000 0.46318 9.70000 MR SS 1 0.94100 0.75170 9.61000 RR EE 1 0.94400 0.77407 9.64000 KK EE 1 0.95000 0.57737 9.70000 VI EE 1 0.95200 0.33824 9.72000 TT EE 1 0.95200 0.57398 9.72000 LL -- 1 0.95200 0.66221 9.72000 PP SS 1 0.95000 0.70763 9.70000 YY SS 1 0.95100 0.67333 9.71000 SS -- 1 0.95200 0.63921 9.72000 GG SS 1 0.95100 0.63674 9.71000 ND SS 1 0.95500 0.48466 9.75000 YY HH 1 0.95500 0.57243 9.75000 EE HH 1 0.95000 0.61111 9.70000 RR HH 1 0.95300 0.35725 9.73000 LL HH 1 0.95400 0.53541 9.74000 QQ HH 1 0.95300 0.62391 9.73000 TI HH 1 0.95200 0.64805 9.72000 AA HH 1 0.95200 0.64515 9.72000 AA HH 1 0.93800 0.76942 9.58000 GG TS 1 0.90700 0.99767 9.27000 KK SS 1 0.93700 0.69660 9.57000 IP -- 1 0.94300 0.78097 9.63000 RR GG 1 0.93900 0.73193 9.59000 EE GG 1 0.91100 0.93160 9.31000 NK GG 1 0.94200 0.57435 9.62000 II SS 1 0.95300 0.54156 9.73000 PP -- 1 0.95000 0.62470 9.70000 LI BB 1 0.94400 0.78426 9.64000 GG SS 1 0.93200 0.84730 9.52000 LL HH 1 0.94500 0.56521 9.65000 PP HH 1 0.95000 0.39122 9.70000 AA HH 1 0.94300 0.67874 9.63000 LL HH 1 0.95100 0.52511 9.71000 DD HH 1 0.95100 0.59320 9.71000 SS HH 1 0.95000 0.68560 9.70000 AA HH 1 0.95400 0.60762 9.74000 II HH 1 0.95500 0.57224 9.75000 TS HH 1 0.95300 0.63334 9.73000 TT HH 1 0.95400 0.60065 9.74000 LL HH 1 0.94500 0.57882 9.65000 FL HT 1 0.89200 0.89740 9.12000 YH TS 1 0.83700 1.23343 8.57000 YY T- 1 0.77800 1.37283 7.98000 ND -- 1 0.79100 1.21276 8.11000 AS HH 1 0.82000 1.31410 8.40000 NT HH 1 0.75800 1.39607 7.78000 SA HH 1 0.85900 0.67109 8.79000 AA HH 1 0.93400 0.79394 9.54000 AA HH 1 0.95000 0.58840 9.70000 SG HH 1 0.94600 0.72527 9.66000 AA HH 1 0.94800 0.64344 9.68000 LL HH 1 0.94900 0.59819 9.69000 ML HH 1 0.95000 0.61885 9.70000 VV HH 1 0.95500 0.44019 9.75000 LL HH 1 0.95500 0.52022 9.75000 II HH 1 0.95600 0.53679 9.76000 QQ HH 1 0.95200 0.56941 9.72000 ST HH 1 0.94000 0.80784 9.60000 TT TH 1 0.93700 0.85206 9.57000 SA HH 1 0.94300 0.73660 9.63000 EE HH 1 0.95200 0.53148 9.72000 AA HH 1 0.95000 0.58285 9.70000 AA HH 1 0.94700 0.68079 9.67000 RR HH 1 0.95200 0.56205 9.72000 YF BB 1 0.95600 0.24524 9.76000 KK HH 1 0.95600 0.44967 9.76000 FY HH 1 0.95200 0.61360 9.72000 II HH 1 0.95400 0.50051 9.74000 EE HH 1 0.94700 0.63669 9.67000 QQ HH 1 0.93700 0.81469 9.57000 QQ HH 1 0.94600 0.67788 9.66000 II HH 1 0.89000 0.76407 9.10000 GQ HH 1 0.71900 1.30639 7.39000 KE TT 1 0.72400 1.40161 7.44000 RR -T 1 0.84600 1.24724 8.66000 VA SS 1 0.83800 1.27776 8.58000 DY SS 1 0.86400 1.13043 8.84000 KR -S 1 0.91200 0.79805 9.32000 TD -- 1 0.91900 0.85301 9.39000 FE BB 1 0.90800 0.89100 9.28000 LV -- 1 0.91100 0.94074 9.31000 PP -- 1 0.92300 0.70708 9.43000 SS -- 1 0.89500 0.94317 9.15000 LL HH 1 0.91700 0.80761 9.37000 AA HH 1 0.94700 0.41901 9.67000 IT HH 1 0.95800 0.30097 9.78000 II HH 1 0.95200 0.39990 9.72000 SS HH 1 0.93900 0.74118 9.59000 LL HH 1 0.95200 0.44225 9.72000 EE HH 1 0.95600 0.43536 9.76000 NN HH 1 0.95300 0.57169 9.73000 SS HH 1 0.95400 0.50879 9.74000 WW HH 1 0.95700 0.33807 9.77000 SS HH 1 0.95500 0.50566 9.75000 AG HH 1 0.95700 0.34166 9.77000 LL HH 1 0.95900 0.28303 9.79000 SS HH 1 0.95700 0.21389 9.77000 KK HH 1 0.95400 0.53393 9.74000 QQ HH 1 0.95500 0.56442 9.75000 II HH 1 0.95600 0.51397 9.76000 QQ HH 1 0.95600 0.46561 9.76000 IL HH 1 0.95200 0.47237 9.72000 AA HH 1 0.92800 0.60460 9.48000 SQ HT 1 0.80800 1.07761 8.28000 TG TT 1 0.71500 1.39187 7.35000 NN TT 1 0.87800 0.86031 8.98000 NN TT 1 0.93900 0.66196 9.59000 GG TT 1 0.94600 0.71037 9.66000 QI EE 1 0.94700 0.71965 9.67000 FF EE 1 0.94700 0.72736 9.67000 ER EE 1 0.94900 0.72717 9.69000 ST EE 1 0.94900 0.73217 9.69000 PP EE 1 0.94300 0.80932 9.63000 VI EE 1 0.94900 0.72230 9.69000 VV EE 1 0.94100 0.75712 9.61000 LL EE 1 0.92100 0.51826 9.41000 IV E- 1 0.74000 1.07732 7.60000 ND -T 1 0.60700 1.49178 6.27000 AN TT 1 0.67100 1.41161 6.91000 QK TS 0 0.33600 1.92897 3.56000 NG SS 1 0.57400 1.27972 5.94000 QN -S 1 0.77000 1.40505 7.90000 RR E- 1 0.86700 0.78567 8.87000 VV EE 1 0.91700 0.89382 9.37000 TQ EE 1 0.91600 1.01906 9.36000 II EE 1 0.91600 0.91931 9.36000 TT EE 1 0.90700 0.95766 9.27000 NN EE 1 0.93500 0.74987 9.55000 VV TT 1 0.94000 0.45006 9.60000 DT TT 1 0.92900 0.85340 9.49000 AS SS 1 0.93800 0.87646 9.58000 GK HH 1 0.92100 0.95263 9.41000 VV HH 1 0.94400 0.62862 9.64000 VV HH 1 0.95000 0.66195 9.70000 TT HH 1 0.93800 0.83983 9.58000 SS HH 1 0.93900 0.75605 9.59000 NN TT 1 0.95100 0.36905 9.71000 II BB 1 0.95800 0.43536 9.78000 AQ -- 1 0.95800 0.32579 9.78000 LL -- 1 0.95800 0.40128 9.78000 LL BB 1 0.95800 0.42062 9.78000 LL -- 1 0.95900 0.35289 9.79000 NN -- 1 0.95900 0.29520 9.79000 RT TG 1 0.95700 0.34767 9.77000 NR TG 1 0.95600 0.49725 9.76000 NN TG 1 0.95500 0.54019 9.75000 M - *