% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1mee.ent 1meea { CHAIN A -0.88237 0.10192 0.45940 -35.21797 0.31129 0.85858 0.40738 -19.00522 -0.35289 0.50247 -0.78931 12.93540 } /disk3/pdb/pdb1sup.ent 1sup { ALL -0.09360 -0.91393 0.39494 -26.62442 0.25263 -0.40546 -0.87852 28.55772 0.96302 0.01752 0.26883 -15.61389 } % Reading block file... Blocfile read: Length: 274 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 274 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 274 % The alignment: >1meea (cluster A) sequence >1sup (cluster B) sequence >space >1meea_dssp (cluster A) secondary structure from DSSP >1sup_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * AA -- 1 0.94800 0.67650 9.68000 QQ -- 1 0.95400 0.43622 9.74000 SS -- 1 0.95700 0.47715 9.77000 VV -- 1 0.95600 0.51203 9.76000 PP -- 1 0.95500 0.56733 9.75000 YY HH 1 0.95600 0.45413 9.76000 GG HH 1 0.95500 0.49150 9.75000 IV HH 1 0.95400 0.53920 9.74000 SS HH 1 0.95600 0.53188 9.76000 QQ HH 1 0.95600 0.50604 9.76000 II TT 1 0.95700 0.47776 9.77000 KK TT 1 0.95700 0.49541 9.77000 AA HH 1 0.95700 0.46215 9.77000 PP HH 1 0.95200 0.63045 9.72000 AA HH 1 0.95500 0.55987 9.75000 LL HH 1 0.95600 0.53209 9.76000 HH HH 1 0.95400 0.60641 9.74000 SS HH 1 0.95000 0.67786 9.70000 QQ HH 1 0.95100 0.63068 9.71000 GG TT 1 0.95000 0.65044 9.70000 YY -- 1 0.95600 0.39557 9.76000 TT SS 1 0.95900 0.32733 9.79000 GG -- 1 0.95700 0.38937 9.77000 SS TT 1 0.95500 0.51297 9.75000 NN TT 1 0.95600 0.50652 9.76000 VV -- 1 0.95600 0.35536 9.76000 KK EE 1 0.95500 0.50100 9.75000 VV EE 1 0.95600 0.55520 9.76000 AA EE 1 0.95700 0.47491 9.77000 VV EE 1 0.95700 0.49191 9.77000 II EE 1 0.95500 0.53965 9.75000 DD EE 1 0.95200 0.61774 9.72000 SS SS 1 0.95600 0.44356 9.76000 GG -- 1 0.95700 0.49206 9.77000 II -- 1 0.95800 0.46133 9.78000 DD -- 1 0.95500 0.51639 9.75000 SS TT 1 0.95500 0.53242 9.75000 SS TT 1 0.95400 0.55209 9.74000 HH -- 1 0.95700 0.36043 9.77000 PP TT 1 0.95700 0.48741 9.77000 DD TT 1 0.95800 0.43887 9.78000 LL -- 1 0.95800 0.35173 9.78000 NK -- 1 0.95700 0.38385 9.77000 VV EE 1 0.95400 0.40069 9.74000 RA EE 1 0.94800 0.67289 9.68000 GG EE 1 0.95200 0.60903 9.72000 GG EE 1 0.95500 0.43404 9.75000 AA EE 1 0.95200 0.62580 9.72000 SS EE 1 0.95100 0.59949 9.71000 FM -- 1 0.93000 0.82280 9.50000 VV B- 1 0.93500 0.59511 9.55000 PP TS 1 0.92200 0.90199 9.42000 SS TS 1 0.92600 0.87182 9.46000 EE B- 1 0.93700 0.74828 9.57000 TT -- 1 0.94100 0.78389 9.61000 NN -- 1 0.94600 0.67305 9.66000 PP TT 1 0.94800 0.44088 9.68000 YF TT 1 0.93900 0.75621 9.59000 QQ -- 1 0.92800 0.86480 9.48000 DD -- 1 0.94300 0.64583 9.63000 GN TS 1 0.95200 0.66157 9.72000 SN TS 1 0.94900 0.66578 9.69000 SS SS 1 0.94100 0.76555 9.61000 HH SH 1 0.94700 0.66538 9.67000 GG HH 1 0.95600 0.44609 9.76000 TT HH 1 0.95800 0.42330 9.78000 HH HH 1 0.95800 0.40437 9.78000 VV HH 1 0.95800 0.37924 9.78000 AA HH 1 0.95800 0.40698 9.78000 GG HH 1 0.95800 0.41810 9.78000 TT HH 1 0.95700 0.47641 9.77000 IV HH 1 0.95700 0.47673 9.77000 AA HH 1 0.95800 0.43017 9.78000 AA -- 1 0.95700 0.43438 9.77000 LL -- 1 0.95700 0.41373 9.77000 NN SS 1 0.95800 0.37331 9.78000 NN SS 1 0.95700 0.38082 9.77000 SS SS 1 0.95500 0.53774 9.75000 II SS 1 0.95700 0.46579 9.77000 GG SS 1 0.95700 0.46187 9.77000 VV -- 1 0.95800 0.45063 9.78000 LL -- 1 0.95800 0.42104 9.78000 GG -- 1 0.95900 0.35448 9.79000 VV SS 1 0.95800 0.33459 9.78000 AA SS 1 0.95600 0.51748 9.76000 PP TT 1 0.95800 0.44619 9.78000 SS TT 1 0.95800 0.44096 9.78000 AA S- 1 0.95800 0.47832 9.78000 SS EE 1 0.95500 0.46992 9.75000 LL EE 1 0.95200 0.58628 9.72000 YY EE 1 0.95400 0.56219 9.74000 AA EE 1 0.95400 0.55415 9.74000 VV EE 1 0.95100 0.63996 9.71000 KK EE 1 0.95500 0.52199 9.75000 VV -- 1 0.94800 0.61454 9.68000 LL SB 1 0.94800 0.57525 9.68000 DG -- 1 0.95000 0.65946 9.70000 SA TT 1 0.95000 0.67423 9.70000 TD TT 1 0.95200 0.59730 9.72000 GG SS 1 0.95000 0.56790 9.70000 SS B- 1 0.93700 0.81943 9.57000 GG -B 1 0.94400 0.68516 9.64000 QQ -- 1 0.94200 0.64777 9.62000 YY HH 1 0.94400 0.63552 9.64000 SS HH 1 0.95300 0.55309 9.73000 WW HH 1 0.95500 0.56641 9.75000 II HH 1 0.95100 0.63036 9.71000 II HH 1 0.94000 0.82593 9.60000 NN HH 1 0.94400 0.80668 9.64000 GG HH 1 0.94900 0.73215 9.69000 II HH 1 0.94800 0.74805 9.68000 EE HH 1 0.94300 0.80362 9.63000 WW HH 1 0.94600 0.74408 9.66000 AA HH 1 0.95200 0.64022 9.72000 II HH 1 0.95100 0.66251 9.71000 SA HH 1 0.94800 0.70104 9.68000 NN TT 1 0.94200 0.69421 9.62000 NN TT 1 0.94600 0.53600 9.66000 MM -- 1 0.95600 0.38906 9.76000 DD SS 1 0.95700 0.49794 9.77000 VV EE 1 0.95600 0.47578 9.76000 II EE 1 0.95600 0.27294 9.76000 NN EE 1 0.95200 0.53883 9.72000 MM EE 1 0.95500 0.42197 9.75000 SS -- 1 0.95800 0.39872 9.78000 LL E- 1 0.95500 0.45779 9.75000 GG E- 1 0.94900 0.68411 9.69000 GG BB 1 0.94200 0.74182 9.62000 PP SS 1 0.94600 0.61116 9.66000 TS S- 1 0.94900 0.62660 9.69000 GG -- 1 0.94400 0.75651 9.64000 SS -- 1 0.95000 0.67723 9.70000 TA HH 1 0.95000 0.66313 9.70000 AA HH 1 0.94600 0.70931 9.66000 LL HH 1 0.94700 0.69504 9.67000 KK HH 1 0.95300 0.59965 9.73000 TA HH 1 0.94000 0.70344 9.60000 VA HH 1 0.91500 0.92635 9.35000 VV HH 1 0.91200 0.90013 9.32000 DD HH 1 0.94100 0.42011 9.61000 KK HH 1 0.95500 0.42520 9.75000 AA HH 1 0.95100 0.53847 9.71000 VV HH 1 0.94900 0.62582 9.69000 SA HH 1 0.95500 0.49235 9.75000 SS TT 1 0.95400 0.40675 9.74000 GG TT 1 0.94300 0.69510 9.63000 IV -- 1 0.95400 0.36496 9.74000 VV EE 1 0.95700 0.34633 9.77000 VV EE 1 0.95300 0.55324 9.73000 AV EE 1 0.94900 0.56810 9.69000 AA EE 1 0.94800 0.63515 9.68000 AA EE 1 0.95200 0.62866 9.72000 AA -- 1 0.95400 0.57161 9.74000 GG -- 1 0.95500 0.52875 9.75000 NN SS 1 0.95500 0.53012 9.75000 EE -- 1 0.95100 0.60340 9.71000 GG -- 1 0.94000 0.62716 9.60000 ST -- 1 0.86100 0.80433 8.81000 SS BB 1 0.76600 1.33868 7.86000 GG TT 1 0.80100 1.38840 8.21000 SS TT 1 0.86000 1.14784 8.80000 TS BB 1 0.90200 0.90104 9.22000 SS -- 1 0.94500 0.53648 9.65000 TT -- 1 0.95400 0.55360 9.74000 VV -- 1 0.95200 0.54516 9.72000 GG -- 1 0.94200 0.71001 9.62000 YY BB 1 0.95100 0.42094 9.71000 PP TT 1 0.95700 0.40000 9.77000 AG TT 1 0.95900 0.32913 9.79000 KK TT 1 0.95800 0.38685 9.78000 YY SS 1 0.95600 0.48556 9.76000 PP TT 1 0.95800 0.31338 9.78000 SS TT 1 0.95700 0.44563 9.77000 TV SS 1 0.95700 0.38011 9.77000 II EE 1 0.95600 0.42550 9.76000 AA EE 1 0.95100 0.61338 9.71000 VV EE 1 0.95500 0.49013 9.75000 GG EE 1 0.95700 0.47255 9.77000 AA EE 1 0.95700 0.45381 9.77000 VV EE 1 0.95600 0.41123 9.76000 ND -- 1 0.95000 0.58493 9.70000 SS TT 1 0.94500 0.74421 9.65000 AS TT 1 0.94400 0.75985 9.64000 NN SS 1 0.95300 0.51069 9.73000 QQ -- 1 0.95600 0.50742 9.76000 RR BB 1 0.95700 0.42698 9.77000 AA -- 1 0.95800 0.38126 9.78000 SS TT 1 0.95600 0.52390 9.76000 FF TT 1 0.95600 0.54381 9.76000 SS -- 1 0.95600 0.53783 9.76000 SS -- 1 0.95500 0.54887 9.75000 AV -- 1 0.95700 0.41958 9.77000 GG SS 1 0.95500 0.51936 9.75000 SP TT 1 0.95500 0.54236 9.75000 EE TT 1 0.95500 0.54899 9.75000 LL -- 1 0.95500 0.51858 9.75000 DD -- 1 0.95400 0.55588 9.74000 VV EE 1 0.95600 0.32106 9.76000 MM EE 1 0.95800 0.40586 9.78000 AA EE 1 0.95800 0.45440 9.78000 PP EE 1 0.95800 0.38847 9.78000 GG -- 1 0.95700 0.45999 9.77000 VV SS 1 0.95800 0.43121 9.78000 SS SS 1 0.95800 0.43787 9.78000 II EE 1 0.95800 0.43162 9.78000 QQ EE 1 0.95700 0.50031 9.77000 SS EE 1 0.95800 0.39239 9.78000 TT EE 1 0.95700 0.43288 9.77000 LL EE 1 0.95500 0.53471 9.75000 PP TT 1 0.95600 0.48395 9.76000 GG TT 1 0.95400 0.49524 9.74000 GN TT 1 0.95000 0.63449 9.70000 TK EE 1 0.94800 0.66418 9.68000 YY EE 1 0.95500 0.35585 9.75000 GG EE 1 0.95800 0.36357 9.78000 AA EE 1 0.95400 0.57362 9.74000 YY EE 1 0.95500 0.58309 9.75000 NN -- 1 0.95200 0.56253 9.72000 GG SS 1 0.95200 0.56096 9.72000 TT HH 1 0.95300 0.60368 9.73000 SS HH 1 0.95500 0.52281 9.75000 MM HH 1 0.95700 0.31855 9.77000 AA HH 1 0.95500 0.48294 9.75000 TS HH 1 0.95700 0.32169 9.77000 PP HH 1 0.95900 0.36536 9.79000 HH HH 1 0.95900 0.35221 9.79000 VV HH 1 0.95900 0.37283 9.79000 AA HH 1 0.95800 0.41047 9.78000 GG HH 1 0.95800 0.39991 9.78000 AA HH 1 0.95900 0.37258 9.79000 AA HH 1 0.95900 0.34548 9.79000 AA HH 1 0.95800 0.39972 9.78000 LL HH 1 0.95700 0.41871 9.77000 II HH 1 0.95500 0.55013 9.75000 LL HH 1 0.95700 0.46192 9.77000 SS HH 1 0.95700 0.42298 9.77000 KK HH 1 0.95400 0.42605 9.74000 HH -- 1 0.94600 0.68619 9.66000 PP TT 1 0.94500 0.69730 9.65000 TN TT 1 0.95200 0.56456 9.72000 WW -- 1 0.95700 0.47354 9.77000 TT -- 1 0.95700 0.45248 9.77000 NN HH 1 0.95700 0.46518 9.77000 AT HH 1 0.95600 0.52867 9.76000 QQ HH 1 0.95700 0.42692 9.77000 VV HH 1 0.95600 0.51338 9.76000 RR HH 1 0.95600 0.49648 9.76000 DS HH 1 0.95300 0.55737 9.73000 RS HH 1 0.94600 0.70417 9.66000 LL HH 1 0.95500 0.45771 9.75000 EE HH 1 0.95600 0.53451 9.76000 SN HH 1 0.95700 0.43877 9.77000 TT ST 1 0.95000 0.61368 9.70000 AT -- 1 0.95200 0.60302 9.72000 TT BB 1 0.94700 0.61772 9.67000 YK -- 1 0.94200 0.70859 9.62000 LL -- 1 0.95000 0.65825 9.70000 GG SS 1 0.94800 0.69035 9.68000 SD -- 1 0.94000 0.72747 9.60000 SS HH 1 0.94900 0.44063 9.69000 FF HH 1 0.95400 0.53067 9.74000 YY HH 1 0.95700 0.33454 9.77000 YY HH 1 0.95800 0.40286 9.78000 GG TT 1 0.95700 0.36779 9.77000 KK TT 1 0.95600 0.48393 9.76000 GG -- 1 0.95800 0.33754 9.78000 LL BB 1 0.95800 0.37674 9.78000 II -- 1 0.95700 0.36539 9.77000 NN -- 1 0.95400 0.51217 9.74000 VV HH 1 0.95400 0.53329 9.74000 QQ HH 1 0.95000 0.67591 9.70000 AA HH 1 0.95300 0.63092 9.73000 AA HH 1 0.94800 0.64469 9.68000 AA TT 1 0.90600 0.81808 9.26000 *