% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1loe.ent 1loea { CHAIN A -0.61802 0.77626 -0.12428 50.60377 -0.75889 -0.63040 -0.16334 71.31602 -0.20515 -0.00663 0.97872 7.55063 } /disk3/pdb/pdb2ltn.ent 2ltna { CHAIN A -0.23188 0.60038 0.76538 -30.83138 0.28838 0.79387 -0.53539 25.72226 -0.92899 0.09661 -0.35719 47.10344 } % Reading block file... Blocfile read: Length: 180 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 180 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 180 % The alignment: >1loea (cluster A) sequence >2ltna (cluster B) sequence >space >1loea_dssp (cluster A) secondary structure from DSSP >2ltna_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * TT -- 1 0.94900 0.66210 9.69000 EE EE 1 0.95300 0.49408 9.73000 TT EE 1 0.95500 0.54733 9.75000 TT EE 1 0.95700 0.44991 9.77000 SS EE 1 0.95800 0.40979 9.78000 FF EE 1 0.95400 0.37059 9.74000 SL EE 1 0.94800 0.67716 9.68000 II EE 1 0.95100 0.63706 9.71000 TT SS 1 0.95300 0.38622 9.73000 KK SS 1 0.95200 0.60606 9.72000 FF -- 1 0.95100 0.62484 9.71000 GS -- 1 0.93600 0.76049 9.56000 PP SS 1 0.93300 0.72192 9.53000 DD SS 1 0.94800 0.54808 9.68000 QQ -- 1 0.95500 0.58351 9.75000 QQ TT 1 0.95300 0.57782 9.73000 NN TT 1 0.95700 0.34508 9.77000 LL EE 1 0.95800 0.33874 9.78000 II EE 1 0.95700 0.45493 9.77000 FF EE 1 0.95700 0.41770 9.77000 QQ EE 1 0.95400 0.58574 9.74000 GG EE 1 0.95300 0.56716 9.73000 DD TT 1 0.94500 0.63978 9.65000 GG -- 1 0.95100 0.46142 9.71000 YY EE 1 0.95200 0.54041 9.72000 TT EE 1 0.89000 0.76196 9.10000 TT E- 1 0.72300 1.33938 7.43000 KK TS 1 0.85700 0.61674 8.77000 EE TS 1 0.93500 0.77036 9.55000 RK ES 1 0.94400 0.60187 9.64000 LL EE 1 0.95300 0.48429 9.73000 TT EE 1 0.94700 0.64227 9.67000 LL EE 1 0.95300 0.49431 9.73000 TT EE 1 0.95200 0.59354 9.72000 KK -- 1 0.95300 0.56167 9.73000 AA SS 1 0.95400 0.52661 9.74000 VV -- 1 0.95100 0.62848 9.71000 RK SS 1 0.95200 0.66439 9.72000 NN SS 1 0.94900 0.71848 9.69000 TT -- 1 0.94400 0.69812 9.64000 VV EE 1 0.94900 0.52198 9.69000 GG EE 1 0.95700 0.38769 9.77000 RR EE 1 0.95900 0.34556 9.79000 AA EE 1 0.95700 0.44093 9.77000 LL EE 1 0.95800 0.38195 9.78000 YY EE 1 0.95800 0.26186 9.78000 SS SS 1 0.95600 0.46439 9.76000 SS SS 1 0.95700 0.42914 9.77000 PP -- 1 0.95600 0.35992 9.76000 II EE 1 0.95300 0.51873 9.73000 HH EE 1 0.95700 0.32697 9.77000 II -- 1 0.95900 0.25515 9.79000 WW BB 1 0.94700 0.27447 9.67000 DD -- 1 0.92600 0.82231 9.46000 SR TT 1 0.90800 1.01571 9.28000 KE TT 1 0.91800 0.85740 9.38000 TT TT 1 0.94100 0.55853 9.61000 GG -- 1 0.95100 0.60048 9.71000 NN -- 1 0.95100 0.59025 9.71000 VV BB 1 0.95600 0.39209 9.76000 AA -- 1 0.95700 0.35495 9.77000 NN EE 1 0.95600 0.50067 9.76000 FF EE 1 0.95600 0.53629 9.76000 VV EE 1 0.95700 0.47795 9.77000 TT EE 1 0.95700 0.48411 9.77000 SS EE 1 0.95600 0.47162 9.76000 FF EE 1 0.95600 0.34213 9.76000 TT EE 1 0.95400 0.54944 9.74000 FF EE 1 0.95700 0.40064 9.77000 VV EE 1 0.95800 0.40274 9.78000 II EE 1 0.95800 0.35886 9.78000 DN EE 1 0.95900 0.36496 9.79000 AA -- 1 0.95900 0.38779 9.79000 PP SS 1 0.95300 0.37513 9.73000 NN SS 1 0.93800 0.73691 9.58000 SS ST 1 0.93700 0.74525 9.57000 YY ST 1 0.93900 0.71649 9.59000 NN SS 1 0.93300 0.83675 9.53000 VV -- 1 0.94700 0.63213 9.67000 AA -- 1 0.95400 0.52401 9.74000 DD -- 1 0.95400 0.52160 9.74000 GG EE 1 0.95800 0.31497 9.78000 FF EE 1 0.95800 0.34672 9.78000 TT EE 1 0.95500 0.50701 9.75000 FF EE 1 0.95800 0.21970 9.78000 FF EE 1 0.95900 0.29049 9.79000 II EE 1 0.95900 0.30224 9.79000 AA EE 1 0.95700 0.27879 9.77000 PP EE 1 0.95300 0.55276 9.73000 VV TT 1 0.95400 0.43017 9.74000 DD TT 1 0.94600 0.68450 9.66000 TT -- 1 0.95300 0.56740 9.73000 KK -- 1 0.95400 0.56406 9.74000 PP -- 1 0.95500 0.42362 9.75000 QQ -- 1 0.95400 0.53775 9.74000 TT -- 1 0.95700 0.43179 9.77000 GG -- 1 0.95800 0.36967 9.78000 GG GG 1 0.95700 0.46106 9.77000 GG GG 1 0.95700 0.48407 9.77000 YY GG 1 0.95800 0.36943 9.78000 LL TT 1 0.95800 0.44616 9.78000 GG TT 1 0.95800 0.46312 9.78000 VV TT 1 0.95800 0.42505 9.78000 FF -- 1 0.95700 0.41120 9.77000 NN SS 1 0.95700 0.34899 9.77000 SS -- 1 0.95800 0.42373 9.78000 KA SS 1 0.95700 0.41715 9.77000 DE SS 1 0.95300 0.59240 9.73000 YY -- 1 0.95300 0.54034 9.73000 DD -- 1 0.95500 0.36952 9.75000 KK GT 1 0.95600 0.46937 9.76000 TT GT 1 0.95200 0.53652 9.72000 ST GS 1 0.94700 0.61305 9.67000 QQ -- 1 0.95400 0.49416 9.74000 TT -- 1 0.95500 0.51747 9.75000 VV EE 1 0.95700 0.30747 9.77000 AA EE 1 0.95900 0.25815 9.79000 VV EE 1 0.95800 0.40273 9.78000 EE EE 1 0.95900 0.27648 9.79000 FF EE 1 0.95800 0.21689 9.78000 DD EE 1 0.95500 0.49400 9.75000 TT -- 1 0.95700 0.34714 9.77000 FF SS 1 0.95700 0.46124 9.77000 YY -- 1 0.95700 0.45010 9.77000 NN -- 1 0.95600 0.49929 9.76000 TA TT 1 0.95700 0.48574 9.77000 AA TT 1 0.95600 0.38932 9.76000 WW TT 1 0.95200 0.60438 9.72000 DD SS 1 0.95600 0.42085 9.76000 PP -- 1 0.95300 0.47491 9.73000 SS TT 1 0.94900 0.58389 9.69000 NN TT 1 0.95500 0.32131 9.75000 GR -- 1 0.95300 0.53373 9.73000 DD -- 1 0.94900 0.61768 9.69000 RR -- 1 0.95500 0.40754 9.75000 HH EE 1 0.95800 0.39003 9.78000 II EE 1 0.95900 0.35161 9.79000 GG EE 1 0.95900 0.36190 9.79000 II EE 1 0.95900 0.32454 9.79000 DD EE 1 0.95500 0.37731 9.75000 VV EE 1 0.94600 0.63115 9.66000 NN SS 1 0.95500 0.22704 9.75000 SS SS 1 0.95900 0.11469 9.79000 II SS 1 0.95900 0.33220 9.79000 KK SS 1 0.95800 0.41807 9.78000 SS -- 1 0.95900 0.35893 9.79000 IV SS 1 0.95800 0.41520 9.78000 NN EE 1 0.95700 0.46868 9.77000 TT EE 1 0.95700 0.38666 9.77000 KK EE 1 0.95700 0.39218 9.77000 SS EE 1 0.95800 0.35462 9.78000 WW -- 1 0.95700 0.42185 9.77000 AK -- 1 0.95800 0.29938 9.78000 LL -- 1 0.95800 0.36152 9.78000 QQ -- 1 0.95800 0.44747 9.78000 NN TT 1 0.95800 0.45142 9.78000 GG TT 1 0.95600 0.51568 9.76000 KE -- 1 0.95500 0.55320 9.75000 EE E- 1 0.95600 0.46259 9.76000 AA EE 1 0.95600 0.46098 9.76000 NN EE 1 0.95800 0.26735 9.78000 VV EE 1 0.95900 0.26689 9.79000 VV EE 1 0.95900 0.16792 9.79000 II EE 1 0.95800 0.39042 9.78000 AA EE 1 0.95700 0.38949 9.77000 FF EE 1 0.95400 0.57519 9.74000 NN EE 1 0.95200 0.63832 9.72000 AA TT 1 0.95200 0.45151 9.72000 AA TT 1 0.94800 0.65394 9.68000 TT TT 1 0.94900 0.66247 9.69000 NN TT 1 0.94700 0.69714 9.67000 VV EE 1 0.95400 0.54585 9.74000 LL EE 1 0.95500 0.54280 9.75000 TT EE 1 0.95700 0.50371 9.77000 VV EE 1 0.95700 0.44426 9.77000 SS EE 1 0.95700 0.48321 9.77000 LL EE 1 0.95500 0.51476 9.75000 TT EE 1 0.95300 0.34752 9.73000 YY -E 1 0.89500 0.66243 9.15000 P - *