% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1kap.ent 1kapp.1 { P 247 _ to P 470 _ 0.46513 0.14704 0.87295 8.96711 0.76675 0.42594 -0.48030 8.71251 -0.44244 0.89272 0.08537 4.85474 } /disk3/pdb/pdb1sat.ent 1sat.1 { _ 247 _ to _ 470 _ 1.00000 0.00025 -0.00099 0.04520 -0.00025 1.00000 -0.00222 0.12183 0.00099 0.00222 1.00000 -0.04790 } % Reading block file... Blocfile read: Length: 226 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 226 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 226 % The alignment: >1kapp.1 (cluster A) sequence >1sat.1 (cluster B) sequence >space >1kapp.1_dssp (cluster A) secondary structure from DSSP >1sat.1_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * GG -- 1 0.93200 0.94724 9.52000 AA BB 1 0.93700 0.89453 9.57000 NN -- 1 0.93500 0.88933 9.55000 LL TT 1 0.94000 0.79704 9.60000 TS TT 1 0.92400 0.92067 9.44000 TT TT 1 0.93000 0.88039 9.50000 RR TT 1 0.94500 0.78239 9.65000 TT -- 1 0.94900 0.74023 9.69000 GG SS 1 0.94800 0.71330 9.68000 DD -- 1 0.95400 0.53337 9.74000 TT -- 1 0.95300 0.60447 9.73000 VV EE 1 0.95600 0.40402 9.76000 YY EE 1 0.95600 0.52725 9.76000 GG EE 1 0.95600 0.52158 9.76000 FF TT 1 0.95700 0.48354 9.77000 NN TT 1 0.95800 0.42888 9.78000 SS -- 1 0.95500 0.50935 9.75000 NN -- 1 0.95000 0.60719 9.70000 TT SS 1 0.94700 0.73732 9.67000 EG -- 1 0.94600 0.78332 9.66000 RR -- 1 0.94800 0.75390 9.68000 DD GG 1 0.94300 0.82550 9.63000 FF GG 1 0.94500 0.79370 9.65000 YL GG 1 0.95000 0.70793 9.70000 SS BB 1 0.95100 0.69441 9.71000 AT -- 1 0.92800 0.76111 9.48000 TT -S 1 0.86400 1.08525 8.84000 SS SS 1 0.89600 0.82627 9.16000 SN TT 1 0.90300 0.97145 9.23000 SS TT 1 0.93200 0.67463 9.52000 SQ -S 1 0.89800 0.93022 9.18000 KK -- 1 0.86600 1.10064 8.86000 LV -- 1 0.91900 0.74902 9.39000 VI -- 1 0.93400 0.81461 9.54000 FF EE 1 0.93700 0.87021 9.57000 SA EE 1 0.92700 0.94887 9.47000 VA EE 1 0.94000 0.78844 9.60000 WW -- 1 0.94100 0.82177 9.61000 DD -- 1 0.94700 0.75082 9.67000 AA -- 1 0.95000 0.68895 9.70000 GG SS 1 0.95300 0.62764 9.73000 GG SS 1 0.95500 0.59299 9.75000 NN -- 1 0.95500 0.55641 9.75000 DD -- 1 0.95600 0.47494 9.76000 TT EE 1 0.95800 0.31240 9.78000 LF EE 1 0.95600 0.50846 9.76000 DD EE 1 0.95800 0.43049 9.78000 FF -- 1 0.95800 0.42249 9.78000 SS TT 1 0.95700 0.49147 9.77000 GG TT 1 0.95400 0.48422 9.74000 FY -- 1 0.94600 0.65007 9.66000 ST -- 1 0.94600 0.65760 9.66000 QA SS 1 0.95000 0.62797 9.70000 NN -- 1 0.95500 0.53531 9.75000 QQ -- 1 0.95400 0.56010 9.74000 KR EE 1 0.95200 0.65847 9.72000 II EE 1 0.95200 0.67930 9.72000 NN EE 1 0.94900 0.71496 9.69000 LL -- 1 0.95300 0.63491 9.73000 NN SS 1 0.94800 0.71739 9.68000 EE TT 1 0.94800 0.71441 9.68000 KK TT 1 0.94300 0.81429 9.63000 AS -- 1 0.94300 0.80385 9.63000 LF EE 1 0.92700 0.94338 9.47000 SS EE 1 0.94300 0.78753 9.63000 DD BB 1 0.94600 0.75243 9.66000 VV -- 1 0.95200 0.61462 9.72000 GG TT 1 0.95300 0.55711 9.73000 GG TT 1 0.94800 0.70903 9.68000 LL -- 1 0.94800 0.75490 9.68000 KK BB 1 0.94500 0.80156 9.65000 GG SS 1 0.94000 0.85705 9.60000 NN -- 1 0.94100 0.84646 9.61000 VV EE 1 0.94500 0.79505 9.65000 SS EE 1 0.94300 0.81659 9.63000 II EE 1 0.94600 0.77365 9.66000 AA -- 1 0.94000 0.84515 9.60000 AA TT 1 0.94000 0.85390 9.60000 GG TT 1 0.94200 0.81897 9.62000 VV -- 1 0.94800 0.70019 9.68000 TT -- 1 0.95200 0.62436 9.72000 VI -- 1 0.95400 0.51580 9.74000 EE -- 1 0.95700 0.34974 9.77000 NN EE 1 0.95700 0.41508 9.77000 AA EE 1 0.95400 0.55316 9.74000 II EE 1 0.95800 0.38813 9.78000 GG -- 1 0.95800 0.39020 9.78000 GG -- 1 0.95700 0.33241 9.77000 SS SS 1 0.95400 0.50599 9.74000 GG SS 1 0.95300 0.59597 9.73000 SN -- 1 0.95600 0.52338 9.76000 DD -- 1 0.95200 0.59507 9.72000 LV EE 1 0.94600 0.72280 9.66000 LI EE 1 0.95200 0.55055 9.72000 IV EE 1 0.94500 0.73224 9.65000 GG -- 1 0.94700 0.61244 9.67000 NN -- 1 0.92900 0.88044 9.49000 DA SS 1 0.90600 1.00122 9.26000 VA SS 1 0.93100 0.76524 9.51000 AN -- 1 0.93700 0.84339 9.57000 NN -- 1 0.94700 0.70068 9.67000 VV EE 1 0.95200 0.65920 9.72000 LL EE 1 0.95100 0.61361 9.71000 KK EE 1 0.95600 0.40441 9.76000 GG -- 1 0.95800 0.39986 9.78000 GG -- 1 0.95900 0.31765 9.79000 AA SS 1 0.95900 0.23493 9.79000 GG SS 1 0.95900 0.29490 9.79000 NN -- 1 0.95700 0.14256 9.77000 DD -- 1 0.95300 0.50712 9.73000 IV EE 1 0.94900 0.65767 9.69000 LL EE 1 0.94600 0.74482 9.66000 YF EE 1 0.94000 0.85190 9.60000 GG -- 1 0.94400 0.78336 9.64000 GG -- 1 0.93100 0.91396 9.51000 LG SS 1 0.91900 1.00342 9.39000 GG SS 1 0.91700 0.99113 9.37000 AA -- 1 0.89300 1.10109 9.13000 DD -- 1 0.92300 0.88666 9.43000 QE EE 1 0.94800 0.65049 9.68000 LL EE 1 0.95200 0.66798 9.72000 WW EE 1 0.95400 0.60631 9.74000 GG -- 1 0.95400 0.59218 9.74000 GG -- 1 0.95600 0.50601 9.76000 AA SS 1 0.95700 0.48356 9.77000 GG SS 1 0.95700 0.39806 9.77000 AK -- 1 0.95600 0.48788 9.76000 DD -- 1 0.95500 0.51638 9.75000 TI EE 1 0.95200 0.59703 9.72000 FF EE 1 0.94300 0.75285 9.63000 VV EE 1 0.92000 0.95140 9.40000 YF -- 1 0.87900 1.16521 8.99000 GS S- 1 0.82200 1.39359 8.42000 DA -- 1 0.82700 1.38764 8.47000 IA GG 1 0.79400 1.43327 8.14000 AS GG 1 0.82700 1.30692 8.47000 ED GG 1 0.88900 1.11965 9.09000 SS GG 1 0.87100 1.21563 8.91000 SA B- 1 0.83100 1.34711 8.51000 AP TT 1 0.72900 1.51318 7.49000 AG TT 1 0.56800 1.77206 5.88000 AA BS 1 0.78100 1.31124 8.01000 PS -- 1 0.84500 1.27322 8.65000 DD EE 1 0.90900 0.94763 9.29000 TW EE 1 0.94000 0.81423 9.60000 LI EE 1 0.94100 0.72724 9.61000 RR TS 1 0.93000 0.86232 9.50000 DD TS 1 0.94600 0.71864 9.66000 FF -- 1 0.94700 0.76733 9.67000 VQ -- 1 0.94500 0.78008 9.65000 SK TT 1 0.94400 0.78419 9.64000 GG TT 1 0.94900 0.71798 9.69000 QI TT 1 0.94700 0.76461 9.67000 DD -S 1 0.94900 0.72390 9.69000 KK EE 1 0.95100 0.67682 9.71000 II EE 1 0.94700 0.68395 9.67000 DD EE 1 0.94400 0.53326 9.64000 LL -- 1 0.93200 0.85700 9.52000 SS TH 1 0.92200 0.79530 9.42000 G T L S DF HH AF HH 0 0.31200 1.95029 3.32000 FD HH 1 0.62100 0.98828 6.41000 VK HH 1 0.72600 1.16815 7.46000 NE TH 1 0.47700 1.77226 4.97000 A H N T GS S- GS -T 0 0.30800 2.26259 3.28000 LS -T 1 0.47100 1.99859 4.91000 VF -S 1 0.57300 1.75726 5.93000 LI -S 1 0.53200 1.79303 5.52000 QH EE 1 0.51600 1.86416 5.36000 YF EE 1 0.71300 1.58693 7.33000 VV -- 1 0.65000 1.67303 6.70000 DD SS 1 0.58500 1.79045 6.05000 AH SS 1 0.68500 1.60798 7.05000 FF -- 1 0.79300 1.15482 8.13000 AS -- 1 0.74500 1.36163 7.65000 GG SS 1 0.72900 1.50229 7.49000 KT -- 1 0.80900 1.40436 8.29000 AA TT 1 0.80700 1.43583 8.27000 GG TT 1 0.81500 1.40739 8.35000 QE EE 1 0.84800 1.31688 8.68000 AA EE 1 0.86700 1.26760 8.87000 IL EE 1 0.84800 1.13740 8.68000 LL EE 1 0.87700 0.35383 8.97000 SS EE 1 0.88100 1.03027 9.01000 YY EE 1 0.88200 1.11047 9.02000 DN EE 1 0.89800 0.96053 9.18000 AA TT 1 0.88400 1.13887 9.04000 AS TT 1 0.88800 1.13479 9.08000 SS TT 1 0.91300 0.93553 9.33000 KN TT 1 0.93400 0.73320 9.54000 AV EE 1 0.92600 0.93656 9.46000 GT EE 1 0.92000 0.96971 9.40000 SD EE 1 0.91000 0.94226 9.30000 LL EE 1 0.94000 0.57923 9.60000 AS EE 1 0.93600 0.36558 9.56000 IV EE 1 0.90100 0.94778 9.21000 DN E- 1 0.84000 1.18409 8.60000 FI SS 1 0.71100 1.53967 7.31000 SG SS 1 0.57500 1.85204 5.95000 GG S- 1 0.60400 1.84086 6.24000 DH S- 0 0.40500 1.85329 4.25000 AA SS 0 0.27400 1.90362 2.94000 HA SS 1 0.67600 0.86456 6.96000 AP -- 1 0.92100 0.63174 9.41000 DD SS 1 0.87600 1.12269 8.96000 FF EE 1 0.90900 1.06118 9.29000 AL EE 1 0.90100 1.09393 9.21000 IV EE 1 0.93300 0.85368 9.53000 NK EE 1 0.94000 0.78028 9.60000 LI EE 1 0.94900 0.59105 9.69000 IV EE 1 0.94800 0.67824 9.68000 GG SS 1 0.92800 0.78903 9.48000 QQ -- 1 0.89700 1.09191 9.17000 AV -- 1 0.86200 1.12377 8.82000 TD -- 1 0.75700 1.35297 7.77000 V T QA GT 0 0.18900 2.00110 2.09000 AT GT 1 0.57200 1.49607 5.92000 DD GS 1 0.83600 0.83157 8.56000 IF EE 1 0.85600 1.18373 8.76000 V E *