% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1gec.ent 1gece { CHAIN E -0.41560 -0.48549 0.76912 70.01496 0.54843 0.54083 0.63778 50.54935 -0.72557 0.68688 0.04151 50.88660 } /disk3/pdb/pdb1ppn.ent 1ppn { ALL 0.22094 -0.89646 -0.38409 64.53754 0.19009 0.42588 -0.88459 103.21500 0.95659 0.12242 0.26450 43.60190 } % Reading block file... Blocfile read: Length: 215 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 215 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 215 % The alignment: >1gece (cluster A) sequence >1ppn (cluster B) sequence >space >1gece_dssp (cluster A) secondary structure from DSSP >1ppn_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * LI -- 1 0.91300 1.03102 9.33000 PP -- 1 0.91500 0.96715 9.35000 EE SS 1 0.93200 0.84095 9.52000 SY -- 1 0.90300 0.96866 9.23000 VV EE 1 0.93300 0.43724 9.53000 DD EE 1 0.95100 0.62205 9.71000 WW TT 1 0.95000 0.53066 9.70000 RR TT 1 0.93800 0.75848 9.58000 AQ TT 1 0.92700 0.83773 9.47000 KK TT 1 0.94700 0.40906 9.67000 GG TT 1 0.95700 0.46096 9.77000 AA -- 1 0.95800 0.42098 9.78000 VV -- 1 0.95700 0.45295 9.77000 TT -- 1 0.95700 0.48797 9.77000 PP -- 1 0.95600 0.51910 9.76000 VV -- 1 0.95600 0.54625 9.76000 KK -- 1 0.94800 0.51014 9.68000 HN BB 1 0.92000 0.84666 9.40000 QQ -- 1 0.93300 0.68486 9.53000 GG -T 1 0.94500 0.69853 9.65000 YS ST 1 0.94400 0.71860 9.64000 CC SS 1 0.95100 0.41713 9.71000 EG BB 1 0.95300 0.55415 9.73000 SS -- 1 0.94700 0.71979 9.67000 CC HH 1 0.95300 0.60469 9.73000 WW HH 1 0.95500 0.48804 9.75000 AA HH 1 0.95700 0.37219 9.77000 FF HH 1 0.95600 0.50728 9.76000 SS HH 1 0.95400 0.55179 9.74000 TA HH 1 0.95700 0.38840 9.77000 VV HH 1 0.95300 0.51024 9.73000 AV HH 1 0.93900 0.72912 9.59000 TT HH 1 0.94300 0.58516 9.63000 VI HH 1 0.95000 0.54113 9.70000 EE HH 1 0.95300 0.60427 9.73000 GG HH 1 0.95400 0.55228 9.74000 II HH 1 0.95500 0.44135 9.75000 NI HH 1 0.95200 0.51270 9.72000 KK HH 1 0.95000 0.59766 9.70000 II HH 1 0.95200 0.58397 9.72000 KR HH 1 0.95100 0.57425 9.71000 TT HH 1 0.94200 0.76544 9.62000 GG SS 1 0.94400 0.68982 9.64000 NN -- 1 0.93500 0.82816 9.55000 LL -- 1 0.94300 0.59361 9.63000 VN -- 1 0.93000 0.83316 9.50000 EE -- 1 0.94900 0.60376 9.69000 LY BB 1 0.95600 0.52497 9.76000 SS -- 1 0.95700 0.42255 9.77000 EE HH 1 0.95600 0.42328 9.76000 QQ HH 1 0.95300 0.57589 9.73000 EE HH 1 0.95600 0.44278 9.76000 LL HH 1 0.95500 0.52942 9.75000 VL HH 1 0.95600 0.51108 9.76000 DD HH 1 0.95300 0.49873 9.73000 CC HH 1 0.94400 0.71984 9.64000 DD -- 1 0.94000 0.84305 9.60000 LR ST 1 0.93300 0.83548 9.53000 QR ST 1 0.92700 0.89826 9.47000 SS SS 1 0.92900 0.89877 9.49000 YY -- 1 0.90500 1.06034 9.25000 GG TT 1 0.90900 1.05219 9.29000 CC TT 1 0.91600 1.02822 9.36000 NN BB 1 0.91100 1.03175 9.31000 RG -- 1 0.93600 0.80184 9.56000 GG -- 1 0.94700 0.71959 9.67000 YY -- 1 0.90600 0.82121 9.26000 QP HH 1 0.81000 1.27147 8.30000 SW HH 1 0.86900 1.03994 8.89000 TS HH 1 0.92900 0.69901 9.49000 SA HH 1 0.95000 0.51945 9.70000 LL HH 1 0.94100 0.72785 9.61000 QQ HH 1 0.94900 0.45164 9.69000 YL HH 1 0.94700 0.69191 9.67000 VV HH 1 0.95200 0.67796 9.72000 AA HH 1 0.95000 0.63396 9.70000 QQ HH 1 0.93900 0.81745 9.59000 NY HT 1 0.92500 0.86972 9.45000 GG -- 1 0.91900 0.86309 9.39000 II BB 1 0.94800 0.53335 9.68000 HH -- 1 0.95300 0.48919 9.73000 LY BB 1 0.94500 0.73124 9.65000 RR TT 1 0.95300 0.59096 9.73000 AN TT 1 0.95500 0.57142 9.75000 KT TT 1 0.94800 0.68319 9.68000 YY SS 1 0.94300 0.47414 9.63000 PP -- 1 0.92200 0.88989 9.42000 YY -- 1 0.94100 0.70247 9.61000 IE -- 1 0.95100 0.54093 9.71000 AG SS 1 0.95300 0.60964 9.73000 KV SS 1 0.95600 0.52578 9.76000 QQ -- 1 0.95100 0.62813 9.71000 QR -- 1 0.92800 0.71354 9.48000 TY -- 1 0.87300 1.13044 8.93000 CC -- 1 0.92200 0.84219 9.42000 RR -- 1 0.93000 0.83133 9.50000 AS HT 1 0.94200 0.65062 9.62000 NR HG 1 0.92500 0.88017 9.45000 QE HG 1 0.93000 0.53756 9.50000 VK HG 1 0.89900 0.89859 9.19000 GG T- 1 0.75100 1.18123 7.71000 GP SS 1 0.65200 1.48546 6.72000 PY -- 1 0.85500 1.13067 8.75000 KA -S 1 0.89300 1.08902 9.13000 VA BB 1 0.90100 0.98527 9.21000 KK -- 1 0.90900 0.97628 9.29000 TT -- 1 0.94200 0.61051 9.62000 ND -S 1 0.94500 0.72874 9.65000 GG EE 1 0.93200 0.83183 9.52000 VV EE 1 0.94300 0.46526 9.63000 GR EE 1 0.93900 0.74331 9.59000 RQ EE 1 0.93800 0.74721 9.58000 VV -E 1 0.94200 0.58133 9.62000 QQ -- 1 0.94300 0.74600 9.63000 SP SS 1 0.93600 0.81592 9.56000 NY SS 1 0.94100 0.63438 9.61000 NN -- 1 0.92800 0.86668 9.48000 EE HH 1 0.93200 0.80434 9.52000 GG HH 1 0.94300 0.70128 9.63000 SA HH 1 0.95400 0.47939 9.74000 LL HH 1 0.95200 0.53234 9.72000 LL HH 1 0.95200 0.49905 9.72000 NY HH 1 0.95100 0.60251 9.71000 AS HH 1 0.95600 0.40102 9.76000 II HH 1 0.95700 0.39717 9.77000 AA TH 1 0.94900 0.60591 9.69000 HN TH 1 0.95200 0.45942 9.72000 QQ SS 1 0.95600 0.39506 9.76000 PP -- 1 0.95700 0.44856 9.77000 VV EE 1 0.95800 0.42019 9.78000 SS EE 1 0.95600 0.50704 9.76000 VV EE 1 0.95500 0.51636 9.75000 VV EE 1 0.94300 0.60162 9.63000 VL EE 1 0.93100 0.77338 9.51000 EE -- 1 0.95100 0.52403 9.71000 SA -- 1 0.95100 0.47997 9.71000 AA -- 1 0.93500 0.71528 9.55000 GG SS 1 0.93900 0.75185 9.59000 RK HH 1 0.94200 0.79032 9.62000 DD HH 1 0.94000 0.79342 9.60000 FF HH 1 0.94800 0.64834 9.68000 QQ HH 1 0.95000 0.44966 9.70000 NL TT 1 0.94400 0.71177 9.64000 YY -- 1 0.94400 0.49244 9.64000 KR -- 1 0.91000 0.88940 9.30000 GG SS 1 0.93300 0.29803 9.53000 GG SS 1 0.93900 0.74276 9.59000 II EE 1 0.95300 0.56371 9.73000 FF EE 1 0.93500 0.62951 9.55000 EV -- 1 0.90800 0.91150 9.28000 GG -- 1 0.90200 0.95129 9.22000 SP SS 1 0.92800 0.64980 9.48000 CC -- 1 0.93700 0.55182 9.57000 GG -- 1 0.92600 0.82504 9.46000 TN SS 1 0.93300 0.90709 9.53000 KK -- 1 0.93100 0.91102 9.51000 VV -- 1 0.93300 0.81621 9.53000 DD -- 1 0.94900 0.53792 9.69000 HH EE 1 0.95400 0.58849 9.74000 AA EE 1 0.95500 0.53454 9.75000 VV EE 1 0.95400 0.39102 9.74000 TA EE 1 0.95200 0.55012 9.72000 AA EE 1 0.95700 0.37497 9.77000 VV EE 1 0.95600 0.48240 9.76000 GG EE 1 0.95800 0.16968 9.78000 YY EE 1 0.95300 0.19621 9.73000 GG EE 1 0.81200 0.69527 8.32000 K E S E G T G T KP ET 0 0.00000 2.32813 0.19000 GN ET 1 0.43300 1.05257 4.53000 YY EE 1 0.93000 0.56427 9.50000 II EE 1 0.95300 0.46198 9.73000 LL EE 1 0.95800 0.30329 9.78000 II EE 1 0.95800 0.42158 9.78000 KK EE 1 0.95900 0.35488 9.79000 NN -- 1 0.95900 0.32003 9.79000 SS SS 1 0.95800 0.29029 9.78000 WW BB 1 0.95500 0.52833 9.75000 GG -- 1 0.95400 0.57456 9.74000 PT TT 1 0.95100 0.59033 9.71000 GG TT 1 0.93800 0.77310 9.58000 WW SS 1 0.95100 0.39261 9.71000 GG TT 1 0.95700 0.46387 9.77000 EE BB 1 0.95800 0.24311 9.78000 NN TT 1 0.95600 0.45150 9.76000 GG TT 1 0.95500 0.54622 9.75000 YY EE 1 0.95500 0.50776 9.75000 II EE 1 0.95800 0.29458 9.78000 RR EE 1 0.95900 0.34380 9.79000 II EE 1 0.95800 0.36196 9.78000 RK EE 1 0.95100 0.42316 9.71000 RR -- 1 0.70600 0.76954 7.26000 AG -- 0 0.37500 1.84196 3.95000 ST -S 1 0.71000 1.11259 7.30000 GG S- 1 0.80900 1.36403 8.29000 NN -- 1 0.85800 1.18144 8.78000 SS TT 1 0.90600 0.79980 9.26000 PY TT 1 0.91900 0.78994 9.39000 GG -- 1 0.93900 0.68994 9.59000 VV GG 1 0.95100 0.63821 9.71000 CC GG 1 0.94600 0.72503 9.66000 GG GG 1 0.94400 0.74633 9.64000 VL TT 1 0.95000 0.51246 9.70000 YY TT 1 0.94300 0.76431 9.63000 RT SS 1 0.93100 0.79232 9.51000 SS -- 1 0.93500 0.61405 9.55000 SS -E 1 0.94400 0.66870 9.64000 YF EE 1 0.94800 0.68617 9.68000 YY EE 1 0.95400 0.54782 9.74000 PP EE 1 0.94800 0.64643 9.68000 IV EE 1 0.93900 0.77279 9.59000 KK -- 1 0.88500 0.76886 9.05000 *