% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1frg.ent 1frgl.1 { L 1 _ to L 108 _ 0.38615 0.89814 0.21031 -44.73759 -0.91475 0.40227 -0.03831 -3.02089 -0.11908 -0.17763 0.97679 -52.89557 } /disk3/pdb/pdb2imm.ent 2imm { ALL 0.82038 0.41582 -0.39248 -2.18922 -0.35661 0.90868 0.21709 -49.54994 0.44672 -0.03810 0.89377 -31.10807 } % Reading block file... Blocfile read: Length: 113 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 113 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 113 % The alignment: >1frgl.1 (cluster A) sequence >2imm (cluster B) sequence >space >1frgl.1_dssp (cluster A) secondary structure from DSSP >2imm_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * DD -- 1 0.93600 0.91132 9.56000 II -- 1 0.93000 0.89495 9.50000 VV -- 1 0.94400 0.61029 9.64000 MM EE 1 0.95200 0.34418 9.72000 TT EE 1 0.95200 0.57872 9.72000 QQ EE 1 0.94300 0.62654 9.63000 SS EE 1 0.93300 0.72092 9.53000 PP -- 1 0.93100 0.78715 9.51000 SS SS 1 0.93700 0.73494 9.57000 SS EE 1 0.93800 0.53113 9.58000 LL EE 1 0.91300 0.94589 9.33000 TS EE 1 0.92400 0.75457 9.44000 VV EE 1 0.91800 0.86830 9.38000 TS -- 1 0.93300 0.82973 9.53000 AA TT 1 0.93100 0.85868 9.51000 GG TT 1 0.93600 0.81865 9.56000 EE -- 1 0.93600 0.76645 9.56000 KR -- 1 0.92800 0.82121 9.48000 VV EE 1 0.94300 0.60424 9.63000 TT EE 1 0.95500 0.45367 9.75000 MM EE 1 0.95400 0.53104 9.74000 SS EE 1 0.95100 0.63795 9.71000 CC EE 1 0.95500 0.41099 9.75000 KK EE 1 0.95500 0.53014 9.75000 SS EE 1 0.95600 0.52723 9.76000 SS SS 1 0.95400 0.57272 9.74000 QQ SS 1 0.95100 0.61628 9.71000 SS -- 1 0.93500 0.79073 9.55000 LL -- 1 0.92600 0.56551 9.46000 FL EE 1 0.85400 0.93409 8.74000 NN EE 1 0.72500 1.39832 7.45000 SS TT 1 0.62400 1.71562 6.44000 GG TT 1 0.55100 1.89558 5.71000 KN TT 1 0.54700 1.77762 5.67000 RQ TT 1 0.66600 1.38148 6.86000 KK EE 1 0.86600 0.81825 8.86000 NN EE 1 0.93700 0.62037 9.57000 FF -- 1 0.93500 0.70223 9.55000 LL EE 1 0.94100 0.73199 9.61000 TA EE 1 0.95200 0.51020 9.72000 WW EE 1 0.95200 0.62602 9.72000 YY EE 1 0.94300 0.61734 9.63000 HQ EE 1 0.92900 0.83752 9.49000 QQ EE 1 0.93200 0.71466 9.52000 KK -- 1 0.87700 0.93335 8.97000 PP TT 1 0.77200 1.38032 7.92000 GG TT 1 0.76300 1.44327 7.83000 QQ SS 1 0.85900 1.16033 8.79000 PP -- 1 0.89200 1.08217 9.12000 PP E- 1 0.91700 0.84567 9.37000 KK EE 1 0.91800 0.91603 9.38000 LL EE 1 0.93800 0.84611 9.58000 LL EE 1 0.93600 0.86851 9.56000 II EE 1 0.92600 0.95942 9.46000 YY EE 1 0.93200 0.83789 9.52000 WG TT 1 0.93100 0.88075 9.51000 AA TT 1 0.94200 0.80422 9.62000 SS TT 1 0.93900 0.83703 9.59000 TT EE 1 0.93200 0.91536 9.52000 RR EE 1 0.93300 0.90211 9.53000 EE -- 1 0.93600 0.89432 9.56000 SS TT 1 0.92800 0.87064 9.48000 GG TT 1 0.94000 0.66849 9.60000 VV S- 1 0.94600 0.60257 9.66000 PP -- 1 0.90800 0.86441 9.28000 DD TT 1 0.84900 1.08637 8.69000 RR TT 1 0.90800 0.69790 9.28000 FF EE 1 0.95300 0.56477 9.73000 ST EE 1 0.95500 0.33500 9.75000 GG EE 1 0.95200 0.57151 9.72000 SS EE 1 0.95300 0.45579 9.73000 GG EE 1 0.94300 0.72133 9.63000 SS EE 1 0.93600 0.85943 9.56000 GG TT 1 0.93200 0.91800 9.52000 TT TT 1 0.92500 0.93356 9.45000 DD EE 1 0.92000 0.85678 9.40000 FF EE 1 0.94100 0.26829 9.61000 TT EE 1 0.95000 0.57712 9.70000 LL EE 1 0.95300 0.42304 9.73000 TT EE 1 0.95300 0.56852 9.73000 II EE 1 0.95500 0.58232 9.75000 TS SS 1 0.95600 0.50769 9.76000 SS SS 1 0.94700 0.55905 9.67000 VV -- 1 0.94400 0.64950 9.64000 QQ -- 1 0.94300 0.67222 9.63000 AA GG 1 0.92300 0.90108 9.43000 EE GG 1 0.94300 0.67461 9.63000 DD GG 1 0.94600 0.52643 9.66000 LL -- 1 0.91900 0.84717 9.39000 AA SE 1 0.94400 0.25938 9.64000 IV EE 1 0.95900 0.30284 9.79000 YY EE 1 0.95900 0.33252 9.79000 YY EE 1 0.95900 0.28813 9.79000 CC EE 1 0.95800 0.38696 9.78000 QQ EE 1 0.95800 0.29713 9.78000 NN EE 1 0.92600 0.45479 9.46000 DD -- 1 0.79400 1.03974 8.14000 YH SS 1 0.54800 1.64344 5.68000 SS SS 1 0.78400 0.90306 8.04000 HY SS 1 0.93500 0.85940 9.55000 PP SS 1 0.91700 0.94207 9.37000 LL -- 1 0.94200 0.65633 9.62000 TT -E 1 0.94500 0.70314 9.65000 FF BE 1 0.95200 0.46096 9.72000 GG -- 1 0.95600 0.50130 9.76000 AA -- 1 0.95400 0.51871 9.74000 GG -- 1 0.94500 0.69253 9.65000 T E K E L E E E L E K - *