% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1dhy.ent 1dhy.1 { _ 1 _ to _ 132 _ 0.99989 -0.01491 0.00325 -60.93510 0.01490 0.99988 0.00212 -62.96862 -0.00328 -0.00208 0.99999 56.15646 } /disk3/pdb/pdb1han.ent 1han.1 { _ 2 _ to _ 132 _ 1.00000 0.00008 0.00000 0.00031 -0.00008 1.00000 -0.00002 -0.00248 0.00000 0.00002 1.00000 -0.00063 } % Reading block file... Blocfile read: Length: 131 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 131 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 131 % The alignment: >1dhy.1 (cluster A) sequence >1han.1 (cluster B) sequence >space >1dhy.1_dssp (cluster A) secondary structure from DSSP >1han.1_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * SS -- 1 0.86900 1.23081 8.89000 II -E 1 0.90200 1.04157 9.22000 ER -E 1 0.92200 0.94869 9.42000 RS EE 1 0.94300 0.68204 9.63000 LL EE 1 0.95000 0.47982 9.70000 GG EE 1 0.94500 0.70822 9.65000 YY EE 1 0.95400 0.61361 9.74000 LM EE 1 0.95300 0.59237 9.73000 GG EE 1 0.95700 0.34261 9.77000 FF EE 1 0.95800 0.32375 9.78000 AA EE 1 0.95800 0.40564 9.78000 VV EE 1 0.95600 0.38777 9.76000 KS SS 1 0.95100 0.55729 9.71000 DD -- 1 0.94200 0.73471 9.62000 VV HH 1 0.95100 0.46678 9.71000 PA HH 1 0.94900 0.62147 9.69000 AA HH 1 0.95500 0.29829 9.75000 WW HH 1 0.95800 0.38392 9.78000 DR HH 1 0.95800 0.44026 9.78000 HS HH 1 0.95800 0.41004 9.78000 FF HH 1 0.95600 0.50398 9.76000 LL HH 1 0.95300 0.61946 9.73000 TT HH 1 0.95400 0.57330 9.74000 KQ HH 1 0.95500 0.54891 9.75000 SK TT 1 0.95200 0.60896 9.72000 VL TT 1 0.94900 0.66561 9.69000 GG -- 1 0.95300 0.49476 9.73000 LL -- 1 0.95300 0.53475 9.73000 MM EE 1 0.95300 0.52778 9.73000 AE EE 1 0.94800 0.70192 9.68000 AA EE 1 0.95100 0.68774 9.71000 GG EE 1 0.89300 0.65573 9.13000 ST EE 1 0.81500 1.26346 8.35000 AT EE 1 0.76300 1.41666 7.83000 GD TT 0 0.34800 0.78534 3.68000 DN TT 0 0.01800 2.36051 0.38000 AG EE 0 0.35700 0.76147 3.77000 AD EE 1 0.95100 0.57465 9.71000 LL EE 1 0.95600 0.39393 9.76000 YF EE 1 0.95700 0.44474 9.77000 RR EE 1 0.95100 0.54442 9.71000 AI SS 1 0.94700 0.62529 9.67000 DD SS 1 0.95600 0.44860 9.76000 QS SS 1 0.95800 0.35460 9.78000 RR BB 1 0.95800 0.33716 9.78000 AA SS 1 0.95800 0.39407 9.78000 WW -- 1 0.95800 0.38007 9.78000 RR SS 1 0.95600 0.48079 9.76000 II EE 1 0.95800 0.43377 9.78000 AA EE 1 0.95900 0.29477 9.79000 VV EE 1 0.95700 0.29198 9.77000 QQ EE 1 0.94900 0.58999 9.69000 PQ EE 1 0.95000 0.54583 9.70000 GG -- 1 0.94600 0.67485 9.66000 EE SS 1 0.93700 0.82646 9.57000 LV SS 1 0.93300 0.77301 9.53000 DD -- 1 0.94700 0.33276 9.67000 DD EE 1 0.95700 0.48062 9.77000 LL EE 1 0.95700 0.48726 9.77000 AA EE 1 0.95600 0.48906 9.76000 YF EE 1 0.95700 0.35364 9.77000 AA EE 1 0.95100 0.46182 9.71000 GG EE 1 0.94000 0.67026 9.60000 LY EE 1 0.94400 0.68180 9.64000 EE EE 1 0.94800 0.68712 9.68000 VV -E 1 0.95100 0.58882 9.71000 DA SS 1 0.95400 0.55033 9.74000 DD SS 1 0.95600 0.48705 9.76000 AA HH 1 0.94600 0.64300 9.66000 AA HH 1 0.93800 0.73541 9.58000 AG HH 1 0.93800 0.74113 9.58000 LL HH 1 0.95100 0.50150 9.71000 EA HH 1 0.95100 0.60360 9.71000 RQ HH 1 0.94600 0.73935 9.66000 MM HH 1 0.94200 0.78561 9.62000 AA HH 1 0.91900 0.96689 9.39000 DD HH 1 0.93200 0.79734 9.52000 KK HH 1 0.94600 0.60652 9.66000 LL HH 1 0.93700 0.80489 9.57000 RK HH 1 0.93300 0.83420 9.53000 QQ HH 1 0.93800 0.81845 9.58000 AA TT 1 0.93400 0.91507 9.54000 GG TT 1 0.91400 0.97018 9.34000 VI -- 1 0.92300 0.88193 9.43000 AA -- 1 0.93700 0.85027 9.57000 FV -- 1 0.91500 0.92425 9.35000 TT EE 1 0.93500 0.43443 9.55000 RT EE 1 0.93800 0.78917 9.58000 GG -- 1 0.94500 0.78850 9.65000 DD -- 1 0.93300 0.82486 9.53000 EA HH 1 0.89800 1.06607 9.18000 AS HH 1 0.91300 0.98998 9.33000 LL HH 1 0.93500 0.80412 9.55000 MA HH 1 0.93700 0.69439 9.57000 QR HH 1 0.93800 0.75168 9.58000 QR HH 1 0.94800 0.66854 9.68000 RR TH 1 0.95300 0.37834 9.73000 KG TT 1 0.95300 0.54086 9.73000 VV -- 1 0.95100 0.63174 9.71000 MT SS 1 0.94500 0.68508 9.65000 GG EE 1 0.93200 0.84055 9.52000 LL EE 1 0.93800 0.77286 9.58000 LI EE 1 0.95000 0.52864 9.70000 CT EE 1 0.95600 0.36752 9.76000 LF EE 1 0.95300 0.57209 9.73000 QA EE 1 0.95000 0.66155 9.70000 DD -- 1 0.95300 0.49084 9.73000 PP GT 1 0.93700 0.71073 9.57000 FF GT 1 0.93200 0.76007 9.52000 GG GS 1 0.94100 0.72596 9.61000 LL -- 1 0.95100 0.60895 9.71000 PP EE 1 0.95600 0.54820 9.76000 LL EE 1 0.95600 0.52364 9.76000 EE EE 1 0.95300 0.62037 9.73000 II EE 1 0.95400 0.54252 9.74000 YY EE 1 0.95700 0.45571 9.77000 YY EE 1 0.95600 0.41773 9.76000 GG -- 1 0.95300 0.56616 9.73000 PA -- 1 0.95400 0.51082 9.74000 AS -- 1 0.95600 0.37973 9.76000 EE BB 1 0.95600 0.42024 9.76000 IV -- 1 0.95300 0.60566 9.73000 FF TT 1 0.95000 0.51609 9.70000 HE TT 1 0.93800 0.80291 9.58000 EK SS 1 0.94500 0.77501 9.65000 PP -- 1 0.94800 0.65907 9.68000 FF -- 1 0.95400 0.45600 9.74000 LL -- 1 0.95800 0.23764 9.78000 PP -- 1 0.95200 0.38912 9.72000 SG SS 1 0.93400 0.74218 9.54000 A S *