% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1cse.ent 1csee { CHAIN E -0.79313 0.32187 0.51709 12.05606 0.54984 0.74356 0.38053 13.38821 -0.26199 0.58610 -0.76671 34.13951 } /disk3/pdb/pdb1mee.ent 1meea { CHAIN A -0.88219 0.10274 0.45956 -35.24087 0.31242 0.85792 0.40791 -19.01337 -0.35233 0.50343 -0.78895 12.90944 } % Reading block file... Blocfile read: Length: 274 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 274 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 274 % The alignment: >1csee (cluster A) sequence >1meea (cluster B) sequence >space >1csee_dssp (cluster A) secondary structure from DSSP >1meea_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * AA -- 1 0.94600 0.77824 9.66000 QQ -- 1 0.95100 0.64539 9.71000 TS -- 1 0.94700 0.72941 9.67000 VV -- 1 0.95100 0.64381 9.71000 PP -- 1 0.95400 0.56240 9.74000 YY TH 1 0.95700 0.42446 9.77000 GG HH 1 0.95400 0.55497 9.74000 II HH 1 0.94700 0.72179 9.67000 PS HH 1 0.93900 0.77624 9.59000 LQ HH 1 0.95100 0.44438 9.71000 II HT 1 0.95700 0.48582 9.77000 KK TT 1 0.95200 0.46599 9.72000 AA HH 1 0.93900 0.73311 9.59000 DP HH 1 0.93200 0.87572 9.52000 KA HH 1 0.92700 0.86331 9.47000 VL HH 1 0.90600 0.94943 9.26000 QH HH 1 0.90100 0.99179 9.21000 AS HH 1 0.91200 0.92301 9.32000 QQ HH 1 0.90900 0.94877 9.29000 GG TT 1 0.92600 0.81830 9.46000 FY -- 1 0.95000 0.46321 9.70000 KT -S 1 0.95800 0.38419 9.78000 GG -- 1 0.95600 0.48328 9.76000 AS TT 1 0.95200 0.62137 9.72000 NN TT 1 0.95200 0.56329 9.72000 VV -- 1 0.95600 0.37021 9.76000 KK EE 1 0.95700 0.47052 9.77000 VV EE 1 0.95700 0.48210 9.77000 AA EE 1 0.95700 0.46893 9.77000 VV EE 1 0.95600 0.38444 9.76000 LI EE 1 0.95200 0.57362 9.72000 DD EE 1 0.95600 0.52138 9.76000 TS SS 1 0.95400 0.52570 9.74000 GG -- 1 0.95500 0.30986 9.75000 II -- 1 0.95600 0.47040 9.76000 QD -- 1 0.95400 0.53466 9.74000 AS TT 1 0.94800 0.68882 9.68000 SS TT 1 0.94600 0.73553 9.66000 HH -- 1 0.94700 0.62855 9.67000 PP TT 1 0.95300 0.49834 9.73000 DD TT 1 0.95700 0.44476 9.77000 LL -- 1 0.95700 0.45420 9.77000 NN -- 1 0.95600 0.53853 9.76000 VV EE 1 0.95600 0.52654 9.76000 VR EE 1 0.95000 0.64108 9.70000 GG EE 1 0.94800 0.64101 9.68000 GG EE 1 0.95100 0.49147 9.71000 AA EE 1 0.94700 0.68796 9.67000 SS EE 1 0.95200 0.55657 9.72000 FF -- 1 0.94700 0.53037 9.67000 VV SB 1 0.90300 0.60598 9.23000 AP TT 1 0.71400 1.21610 7.34000 GS TT 1 0.54500 1.72994 5.65000 E B ET -- 1 0.55800 1.64759 5.78000 AN -- 1 0.78200 0.81598 8.02000 YP TT 1 0.94000 0.74193 9.60000 NY TT 1 0.92900 0.87599 9.49000 TQ -- 1 0.89100 0.99402 9.11000 DD -- 1 0.89000 0.75830 9.10000 GG ST 1 0.84100 1.23561 8.61000 NS ST 1 0.90000 0.95903 9.20000 GS SS 1 0.91400 0.80909 9.34000 HH HS 1 0.93800 0.67555 9.58000 GG HH 1 0.95400 0.49836 9.74000 TT HH 1 0.95800 0.35276 9.78000 HH HH 1 0.95800 0.21320 9.78000 VV HH 1 0.95500 0.44321 9.75000 AA HH 1 0.95000 0.63527 9.70000 GG HH 1 0.95300 0.55924 9.73000 TT HH 1 0.95700 0.45368 9.77000 VI HH 1 0.95500 0.47484 9.75000 AA HH 1 0.95000 0.65198 9.70000 AA -- 1 0.95200 0.52570 9.72000 LL -- 1 0.95300 0.53008 9.73000 DN -S 1 0.95300 0.57455 9.73000 NN SS 1 0.95300 0.35641 9.73000 TS SS 1 0.94700 0.67868 9.67000 TI SS 1 0.94900 0.55815 9.69000 GG SS 1 0.94200 0.75040 9.62000 VV -- 1 0.95300 0.59899 9.73000 LL -- 1 0.95300 0.60363 9.73000 GG -- 1 0.95000 0.58916 9.70000 VV SS 1 0.95500 0.38137 9.75000 AA SS 1 0.95600 0.49153 9.76000 PP TT 1 0.95700 0.43053 9.77000 SS TT 1 0.95700 0.37233 9.77000 VA SS 1 0.95200 0.56664 9.72000 SS EE 1 0.94900 0.63595 9.69000 LL EE 1 0.95300 0.57132 9.73000 YY EE 1 0.95400 0.56879 9.74000 AA EE 1 0.95100 0.58758 9.71000 VV EE 1 0.95600 0.40728 9.76000 KK EE 1 0.95200 0.43827 9.72000 VV -- 1 0.93900 0.73380 9.59000 LL SS 1 0.95000 0.55414 9.70000 ND -- 1 0.94500 0.60718 9.65000 SS TT 1 0.93200 0.80837 9.52000 ST TT 1 0.95100 0.53037 9.71000 GG SS 1 0.95500 0.51634 9.75000 SS BB 1 0.94900 0.68770 9.69000 GG -- 1 0.94400 0.71652 9.64000 SQ -- 1 0.95100 0.37033 9.71000 YY HH 1 0.95200 0.58424 9.72000 SS HH 1 0.95400 0.55487 9.74000 GW HH 1 0.95600 0.42627 9.76000 II HH 1 0.95200 0.48139 9.72000 VI HH 1 0.94400 0.75336 9.64000 SN HH 1 0.94400 0.78503 9.64000 GG HH 1 0.95000 0.61526 9.70000 II HH 1 0.94300 0.78604 9.63000 EE HH 1 0.93800 0.82343 9.58000 WW HH 1 0.94700 0.64156 9.67000 AA HH 1 0.95000 0.58102 9.70000 TI HH 1 0.93700 0.81369 9.57000 TS HH 1 0.92200 0.87302 9.42000 NN TT 1 0.92700 0.57017 9.47000 GN TT 1 0.89100 0.96695 9.11000 MM -- 1 0.93100 0.32221 9.51000 DD SS 1 0.95300 0.55476 9.73000 VV EE 1 0.95700 0.41556 9.77000 II EE 1 0.95700 0.32396 9.77000 NN EE 1 0.95400 0.51296 9.74000 MM EE 1 0.95300 0.59053 9.73000 SS -- 1 0.95600 0.49797 9.76000 LL EE 1 0.95700 0.49850 9.77000 GG EE 1 0.95500 0.55522 9.75000 GG BB 1 0.94400 0.68169 9.64000 AP SS 1 0.93600 0.73562 9.56000 ST SS 1 0.93600 0.74803 9.56000 GG -- 1 0.93000 0.89421 9.50000 SS -- 1 0.93200 0.90843 9.52000 TT HH 1 0.92900 0.90221 9.49000 AA HH 1 0.92600 0.95089 9.46000 ML HH 1 0.92900 0.86992 9.49000 KK HH 1 0.94400 0.56411 9.64000 QT HH 1 0.94200 0.75567 9.62000 AV HH 1 0.93500 0.79978 9.55000 VV HH 1 0.92600 0.90426 9.46000 DD HH 1 0.94500 0.73432 9.65000 NK HH 1 0.95300 0.61091 9.73000 AA HH 1 0.95400 0.58573 9.74000 YV HH 1 0.94900 0.70660 9.69000 AS HH 1 0.94400 0.77287 9.64000 RS HT 1 0.94400 0.74003 9.64000 GG TT 1 0.93600 0.79871 9.56000 VI -- 1 0.95100 0.40680 9.71000 VV EE 1 0.95600 0.33681 9.76000 VV EE 1 0.95000 0.63450 9.70000 VA EE 1 0.94300 0.70302 9.63000 AA EE 1 0.94800 0.57874 9.68000 AA EE 1 0.94800 0.62510 9.68000 AA -- 1 0.94900 0.54729 9.69000 GG -- 1 0.95300 0.57547 9.73000 NN SS 1 0.95700 0.39068 9.77000 SE -- 1 0.95800 0.36556 9.78000 GG -- 1 0.94900 0.50809 9.69000 NS -- 1 0.91100 0.74553 9.31000 SS -B 1 0.85900 1.18404 8.79000 GG TT 1 0.88900 1.10608 9.09000 SS TT 1 0.89100 0.93369 9.11000 TT -B 1 0.76100 1.33020 7.81000 NS -- 1 0.86100 0.76366 8.81000 TT -- 1 0.94900 0.37226 9.69000 IV -- 1 0.95800 0.30202 9.78000 GG -- 1 0.95800 0.38930 9.78000 YY BB 1 0.95600 0.45283 9.76000 PP TT 1 0.95500 0.50798 9.75000 AA TT 1 0.95600 0.47906 9.76000 KK TT 1 0.94900 0.58408 9.69000 YY SS 1 0.93800 0.75274 9.58000 DP TT 1 0.92700 0.91478 9.47000 SS TT 1 0.93500 0.83342 9.55000 VT SS 1 0.94900 0.64991 9.69000 II EE 1 0.94900 0.66355 9.69000 AA EE 1 0.95500 0.40941 9.75000 VV EE 1 0.95800 0.31338 9.78000 GG EE 1 0.95500 0.47728 9.75000 AA EE 1 0.95400 0.44978 9.74000 VV EE 1 0.95200 0.63334 9.72000 DN -- 1 0.95100 0.61192 9.71000 SS TT 1 0.94100 0.69496 9.61000 NA TT 1 0.91500 0.83467 9.35000 SN SS 1 0.89300 0.93427 9.13000 NQ -- 1 0.93600 0.45962 9.56000 RR BB 1 0.95400 0.31203 9.74000 AA -- 1 0.94600 0.68045 9.66000 SS TT 1 0.94800 0.71698 9.68000 FF TT 1 0.95300 0.62750 9.73000 SS -- 1 0.95500 0.60045 9.75000 SS -- 1 0.95500 0.53196 9.75000 VA -- 1 0.95700 0.29115 9.77000 GG SS 1 0.95700 0.41343 9.77000 AS TT 1 0.94600 0.56087 9.66000 EE TT 1 0.93300 0.72574 9.53000 LL -- 1 0.94900 0.46055 9.69000 ED -- 1 0.95800 0.36740 9.78000 VV EE 1 0.95800 0.29712 9.78000 MM EE 1 0.95700 0.37433 9.77000 AA EE 1 0.95600 0.48087 9.76000 PP EE 1 0.95200 0.52076 9.72000 GG -- 1 0.95000 0.60276 9.70000 AV SS 1 0.95300 0.57553 9.73000 GS SS 1 0.94800 0.63732 9.68000 VI EE 1 0.95500 0.41058 9.75000 YQ EE 1 0.95800 0.41752 9.78000 SS EE 1 0.95900 0.31518 9.79000 TT EE 1 0.95600 0.26856 9.76000 YL EE 1 0.94400 0.60702 9.64000 PP TT 1 0.92000 0.87704 9.40000 TG TT 1 0.91100 0.94581 9.31000 NG TT 1 0.92300 0.86167 9.43000 TT EE 1 0.94700 0.56411 9.67000 YY EE 1 0.95100 0.63662 9.71000 AG EE 1 0.94100 0.80096 9.61000 TA EE 1 0.94700 0.69323 9.67000 LY EE 1 0.95500 0.47286 9.75000 NN -- 1 0.95800 0.39294 9.78000 GG SS 1 0.95800 0.27623 9.78000 TT HH 1 0.95700 0.44394 9.77000 SS HH 1 0.95800 0.34151 9.78000 MM HH 1 0.95800 0.31083 9.78000 AA HH 1 0.95600 0.49626 9.76000 ST HH 1 0.95700 0.42331 9.77000 PP HH 1 0.95800 0.33539 9.78000 HH HH 1 0.95700 0.42858 9.77000 VV HH 1 0.95800 0.28107 9.78000 AA HH 1 0.95900 0.34176 9.79000 GG HH 1 0.95800 0.37630 9.78000 AA HH 1 0.95900 0.20555 9.79000 AA HH 1 0.95800 0.36654 9.78000 AA HH 1 0.95700 0.45864 9.77000 LL HH 1 0.95700 0.45681 9.77000 II HH 1 0.95800 0.43726 9.78000 LL HH 1 0.95800 0.37789 9.78000 SS HH 1 0.95700 0.46470 9.77000 KK HH 1 0.95700 0.41007 9.77000 HH -- 1 0.95700 0.32584 9.77000 PP TT 1 0.95500 0.44696 9.75000 NT TT 1 0.95300 0.56615 9.73000 LW -- 1 0.94900 0.59038 9.69000 ST -- 1 0.93800 0.75346 9.58000 AN HH 1 0.93500 0.70514 9.55000 SA HH 1 0.93700 0.73020 9.57000 QQ HH 1 0.93600 0.78768 9.56000 VV HH 1 0.94600 0.50473 9.66000 RR HH 1 0.94100 0.74899 9.61000 ND HH 1 0.93700 0.82795 9.57000 RR HH 1 0.93900 0.83206 9.59000 LL HH 1 0.94600 0.69672 9.66000 SE HH 1 0.93800 0.82760 9.58000 SS HH 1 0.93100 0.87088 9.51000 TT TS 1 0.94300 0.66837 9.63000 AA -- 1 0.95500 0.45565 9.75000 TT BB 1 0.95600 0.49451 9.76000 YY -- 1 0.95700 0.38533 9.77000 LL -- 1 0.95600 0.42178 9.76000 GG SS 1 0.95300 0.59711 9.73000 SS -- 1 0.95100 0.67543 9.71000 SS HH 1 0.95200 0.65200 9.72000 FF HH 1 0.95200 0.60048 9.72000 YY HH 1 0.95400 0.53127 9.74000 YY HH 1 0.95700 0.39963 9.77000 GG TT 1 0.95700 0.42431 9.77000 KK TT 1 0.95700 0.25164 9.77000 GG -- 1 0.95500 0.47287 9.75000 LL BB 1 0.95700 0.34716 9.77000 II -- 1 0.95900 0.36133 9.79000 NN -- 1 0.95800 0.38185 9.78000 VV HH 1 0.95700 0.31370 9.77000 EQ HH 1 0.95300 0.57664 9.73000 AA HH 1 0.95100 0.61759 9.71000 AA HH 1 0.94900 0.62110 9.69000 AA TT 1 0.94400 0.51026 9.64000 *