% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1cbs.ent 1cbs { ALL -0.93319 -0.28984 -0.21266 78.31004 -0.22862 0.93502 -0.27114 56.64277 0.27744 -0.20438 -0.93873 58.10247 } /disk3/pdb/pdb1cbi.ent 1cbia { CHAIN A -0.84325 0.51143 0.16564 -8.52753 -0.39313 -0.37646 -0.83889 120.24515 -0.36664 -0.77249 0.51845 86.56711 } % Reading block file... Blocfile read: Length: 137 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 137 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 136 % The alignment: >1cbs (cluster A) sequence >1cbia (cluster B) sequence >space >1cbs_dssp (cluster A) secondary structure from DSSP >1cbia_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * PP -- 0 0.16100 2.25439 1.81000 NN -- 0 0.41800 1.06024 4.38000 FF -S 1 0.92800 0.61335 9.48000 SA -- 1 0.94600 0.72668 9.66000 GG EE 1 0.94400 0.74509 9.64000 NT EE 1 0.93300 0.81954 9.53000 WW EE 1 0.94700 0.55054 9.67000 KK EE 1 0.95300 0.53537 9.73000 IM EE 1 0.94700 0.72331 9.67000 IR EE 1 0.94300 0.73267 9.63000 RS EE 1 0.92100 0.94514 9.41000 SS EE 1 0.94200 0.75905 9.62000 EE EE 1 0.94500 0.65670 9.65000 NN SS 1 0.94500 0.65311 9.65000 FF HH 1 0.95000 0.67537 9.70000 ED HH 1 0.95300 0.58877 9.73000 EE HH 1 0.95500 0.54561 9.75000 LL HH 1 0.95400 0.60970 9.74000 LL HH 1 0.95500 0.54475 9.75000 KK HH 1 0.94500 0.63848 9.65000 VA HH 1 0.93900 0.71993 9.59000 LL TT 1 0.95200 0.55148 9.72000 GG TT 1 0.95400 0.62806 9.74000 VV -- 1 0.94800 0.62033 9.68000 NN -- 1 0.92900 0.89956 9.49000 VA HH 1 0.92700 0.97014 9.47000 MM HH 1 0.92500 0.94384 9.45000 LL HH 1 0.93700 0.74565 9.57000 RR HH 1 0.92400 0.93088 9.44000 KK HH 1 0.90600 1.01616 9.26000 IV HH 1 0.93700 0.71034 9.57000 AA HH 1 0.93300 0.82943 9.53000 VV HH 1 0.91500 1.00724 9.35000 AA HH 1 0.91200 1.02558 9.32000 AA HH 1 0.91400 0.95184 9.34000 AA HT 1 0.88600 0.93941 9.06000 SS TT 1 0.71800 1.36762 7.38000 KK SS 1 0.69000 1.48458 7.10000 PP -- 1 0.76700 1.40814 7.87000 AH EE 1 0.85300 1.04364 8.73000 VV EE 1 0.91500 0.77463 9.35000 EE EE 1 0.92700 0.88945 9.47000 II EE 1 0.94600 0.67204 9.66000 KR EE 1 0.95100 0.56144 9.71000 QQ EE 1 0.94200 0.70838 9.62000 ED EE 1 0.93200 0.85601 9.52000 GG TT 1 0.92500 0.94072 9.45000 DD TT 1 0.91800 0.89455 9.38000 TQ EE 1 0.94000 0.44702 9.60000 FF EE 1 0.94100 0.52813 9.61000 YY EE 1 0.91900 0.87317 9.39000 II EE 1 0.89300 1.09742 9.13000 KK EE 1 0.85100 1.31286 8.71000 TT EE 1 0.78700 1.31675 8.07000 SS EE 1 0.47600 1.78030 4.96000 TT -- TT SS VV SS 0 0.00000 3.18376 0.00000 RR -- 0 0.04400 2.71303 0.64000 TT EE 0 0.27000 2.15668 2.90000 TT EE 1 0.54500 1.75960 5.65000 EE EE 1 0.79200 1.36899 8.12000 II EE 1 0.81700 1.31112 8.37000 NN EE 1 0.89700 0.82874 9.17000 FF EE 1 0.94000 0.74132 9.60000 KK EE 1 0.93900 0.79227 9.59000 VV TT 1 0.92600 0.85011 9.46000 GG TT 1 0.92100 0.86423 9.41000 EE SS 1 0.93700 0.75747 9.57000 EG -- 1 0.92200 0.94755 9.42000 FF EE 1 0.94500 0.69423 9.65000 EE EE 1 0.94700 0.68259 9.67000 EE EE 1 0.95200 0.49979 9.72000 QE EE 1 0.95100 0.60888 9.71000 TT -- 1 0.95100 0.61860 9.71000 VV TT 1 0.95000 0.66844 9.70000 DD TT 1 0.93300 0.83179 9.53000 GG SS 1 0.93800 0.79630 9.58000 RR -- 1 0.93800 0.85396 9.58000 PK EE 1 0.93600 0.84477 9.56000 CC EE 1 0.94900 0.66090 9.69000 KR EE 1 0.95100 0.65832 9.71000 SS EE 1 0.94300 0.72929 9.63000 LL EE 1 0.91700 0.88713 9.37000 VP EE 1 0.94200 0.35281 9.62000 KT EE 1 0.95600 0.34733 9.76000 WW EE 1 0.95000 0.59254 9.70000 EE EE 1 0.95000 0.66555 9.70000 SN EE 1 0.94400 0.70240 9.64000 EE TT 1 0.92800 0.82487 9.48000 NN TT 1 0.93700 0.69337 9.57000 KK EE 1 0.94900 0.60395 9.69000 MI EE 1 0.95300 0.59402 9.73000 VH EE 1 0.95600 0.45060 9.76000 CC EE 1 0.95400 0.49163 9.74000 ET EE 1 0.95100 0.63557 9.71000 QQ EE 1 0.95200 0.66152 9.72000 KT EE 1 0.95000 0.70098 9.70000 LL EE 1 0.93300 0.74138 9.53000 LL SS 1 0.83200 0.95127 8.52000 KE SS 1 0.69700 1.41446 7.17000 GG SS 1 0.87600 0.75193 8.96000 ED -- 1 0.94100 0.67903 9.61000 GG -- 1 0.93300 0.75346 9.53000 PP -- 1 0.94900 0.37653 9.69000 KK -- 1 0.95700 0.44346 9.77000 TT EE 1 0.95700 0.46929 9.77000 SY EE 1 0.95700 0.43749 9.77000 WW EE 1 0.95800 0.32161 9.78000 TT EE 1 0.95700 0.45147 9.77000 RR EE 1 0.95600 0.47036 9.76000 EE EE 1 0.95100 0.55755 9.71000 LL EE 1 0.94600 0.70290 9.66000 T - NA TE 0 0.33900 2.05918 3.59000 DN TT 1 0.55000 1.44974 5.70000 GD ST 1 0.87100 0.90484 8.91000 EE -E 1 0.93300 0.87993 9.53000 LL EE 1 0.92900 0.86967 9.49000 II EE 1 0.94800 0.64992 9.68000 LL EE 1 0.95200 0.61187 9.72000 TT EE 1 0.95000 0.41649 9.70000 MF EE 1 0.94000 0.71074 9.60000 TG EE 1 0.94600 0.66270 9.66000 AA EE 1 0.94900 0.50144 9.69000 DD TT 1 0.92600 0.73150 9.46000 DD TT 1 0.91800 0.87364 9.38000 VV EE 1 0.94700 0.68794 9.67000 VV EE 1 0.95200 0.68487 9.72000 CC EE 1 0.94100 0.71495 9.61000 TT EE 1 0.92600 0.79423 9.46000 RR EE 1 0.94300 0.54388 9.63000 VI EE 1 0.95000 0.58953 9.70000 YY EE 1 0.92100 0.74376 9.41000 VV EE 1 0.89800 0.86744 9.18000 RR EE 1 0.90900 0.90918 9.29000 *