% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1bsr.ent 1bsra { CHAIN A -0.13379 0.96676 -0.21787 -21.78040 0.64228 0.25199 0.72383 -67.87308 0.75467 -0.04311 -0.65465 43.27003 } /disk3/pdb/pdb7rsa.ent 7rsa { ALL 0.99326 0.02078 -0.11405 -17.71868 -0.08562 0.79468 -0.60091 -1.31590 0.07812 0.60663 0.79112 -18.37498 } % Reading block file... Blocfile read: Length: 123 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 123 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 123 % The alignment: >1bsra (cluster A) sequence >7rsa (cluster B) sequence >space >1bsra_dssp (cluster A) secondary structure from DSSP >7rsa_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * KK -- 0 0.00000 0.00000 0.00000 EE -- 0 0.00000 0.00000 0.00000 ST -- 0 0.00000 0.00000 0.00000 AA HH 0 0.00000 0.00000 0.00000 AA HH 0 0.00000 0.00000 0.00000 AA HH 0 0.00000 0.00000 0.00000 KK HH 0 0.00000 0.00000 0.00000 FF HH 0 0.00000 0.00000 0.00000 EE HH 0 0.00000 0.00000 0.00000 RR HH 0 0.00000 0.00000 0.00000 QQ HH 0 0.00000 0.00000 0.00000 HH HH 0 0.00000 0.00000 0.00000 MM BB 0 0.00000 0.00000 0.00000 DD -- 0 0.00000 0.00000 0.00000 SS -T 0 0.00000 0.00000 0.00000 GS -T 0 0.00000 0.00000 0.00000 NT S- 0 0.00000 0.00000 0.00000 SS SS 0 0.00000 0.00000 0.00000 PA TS 0 0.00000 0.00000 0.00000 SA T- 0 0.00000 0.00000 0.00000 SS -- 0 0.00000 2.42953 0.13000 SS GS 0 0.34200 0.86030 3.62000 SS GT 1 0.94500 0.53858 9.65000 NN GT 1 0.95100 0.54949 9.71000 YY HH 1 0.95000 0.65769 9.70000 CC HH 1 0.95300 0.63145 9.73000 NN HH 1 0.95600 0.48863 9.76000 LQ HH 1 0.95600 0.55531 9.76000 MM HH 1 0.95600 0.52844 9.76000 MM HH 1 0.95700 0.51012 9.77000 CK HH 1 0.95400 0.57889 9.74000 CS HH 1 0.95600 0.46425 9.76000 RR TT 1 0.95800 0.40632 9.78000 KN TT 1 0.95600 0.38844 9.76000 ML -T 1 0.95000 0.60168 9.70000 TT ST 1 0.94000 0.66178 9.60000 QK SS 1 0.87800 0.80307 8.98000 GD SS 1 0.74000 1.34916 7.60000 KR SS 1 0.88100 0.63260 9.01000 CC -- 1 0.95300 0.53797 9.73000 KK -- 1 0.95400 0.59779 9.74000 PP SS 1 0.95700 0.45360 9.77000 VV EE 1 0.95700 0.44907 9.77000 NN EE 1 0.95400 0.57632 9.74000 TT EE 1 0.95500 0.56641 9.75000 FF EE 1 0.95200 0.62593 9.72000 VV EE 1 0.95100 0.53439 9.71000 HH -- 1 0.95100 0.60051 9.71000 EE SS 1 0.95200 0.60940 9.72000 SS -- 1 0.95500 0.43012 9.75000 LL HH 1 0.94900 0.66597 9.69000 AA HH 1 0.94500 0.72845 9.65000 DD HH 1 0.95200 0.57156 9.72000 VV HH 1 0.95500 0.53069 9.75000 KQ HH 1 0.94900 0.68924 9.69000 AA GG 1 0.94900 0.69162 9.69000 VV GG 1 0.95300 0.53692 9.73000 CC GG 1 0.95500 0.33483 9.75000 SS GG 1 0.95300 0.56030 9.73000 QQ SS 1 0.95100 0.64409 9.71000 KK EE 1 0.95400 0.43512 9.74000 KN EE 1 0.95500 0.52483 9.75000 VV EE 1 0.95600 0.53133 9.76000 TA -- 1 0.95700 0.43360 9.77000 CC -- 1 0.94500 0.58677 9.65000 KK TT 1 0.92400 0.90942 9.44000 NN TT 1 0.92500 0.91072 9.45000 GG SS 1 0.93300 0.79837 9.53000 QQ -- 1 0.95000 0.56106 9.70000 TT SS 1 0.95000 0.58302 9.70000 NN -- 1 0.95400 0.38043 9.74000 CC EE 1 0.95600 0.49537 9.76000 YY EE 1 0.95800 0.38701 9.78000 QQ EE 1 0.95800 0.36643 9.78000 SS -- 1 0.95900 0.37127 9.79000 KY SS 1 0.95800 0.38241 9.78000 SS SS 1 0.95600 0.48979 9.76000 TT -- 1 0.95800 0.30546 9.78000 MM EE 1 0.95800 0.38602 9.78000 RS EE 1 0.95600 0.32504 9.76000 II EE 1 0.95100 0.62212 9.71000 TT EE 1 0.95500 0.51021 9.75000 DD EE 1 0.95000 0.64240 9.70000 CC EE 1 0.94800 0.70103 9.68000 RR EE 1 0.94700 0.69162 9.67000 EE EE 1 0.95200 0.53683 9.72000 TT -- 1 0.89800 0.64284 9.18000 GG TT 1 0.82600 1.18927 8.46000 SS TT 1 0.79300 1.37287 8.13000 SS -- 1 0.87900 0.92509 8.99000 KK BB 1 0.86000 1.18684 8.80000 YY TT 1 0.90000 0.84046 9.20000 PP TT 1 0.89400 1.03776 9.14000 NN BB 1 0.89500 1.06207 9.15000 CC -- 1 0.93000 0.65109 9.50000 AA -- 1 0.94900 0.60866 9.69000 YY EE 1 0.95300 0.54692 9.73000 KK EE 1 0.95600 0.54620 9.76000 TT EE 1 0.95400 0.55788 9.74000 TT EE 1 0.95200 0.59864 9.72000 QQ EE 1 0.95000 0.66266 9.70000 VA EE 1 0.95500 0.53526 9.75000 EN EE 1 0.95800 0.40928 9.78000 KK EE 1 0.95800 0.41637 9.78000 HH -- 1 0.95900 0.30959 9.79000 II EE 1 0.95900 0.27396 9.79000 II EE 1 0.95800 0.26002 9.78000 VV EE 1 0.95700 0.45036 9.77000 AA EE 1 0.95200 0.58191 9.72000 CC EE 1 0.94700 0.64325 9.67000 GE EE 1 0.94600 0.73657 9.66000 GG TT 1 0.92900 0.63966 9.49000 KN TT 1 0.88800 1.01451 9.08000 PP TT 1 0.83600 1.25821 8.56000 SY TT 1 0.90100 0.81925 9.21000 VV EE 1 0.94300 0.55552 9.63000 PP EE 1 0.95300 0.61576 9.73000 VV EE 1 0.95600 0.52298 9.76000 HH EE 1 0.95600 0.53005 9.76000 FF EE 1 0.95700 0.51822 9.77000 DD EE 1 0.95500 0.50485 9.75000 AA EE 1 0.95500 0.33082 9.75000 SS EE 1 0.95100 0.57552 9.71000 *