% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1bit.ent 1bit { ALL -0.55084 -0.80824 0.20819 131.58249 -0.57572 0.54858 0.60624 22.57290 -0.60421 0.21415 -0.76752 21.68141 } /disk3/pdb/pdb1brb.ent 1brbe { CHAIN E 0.88311 0.15445 -0.44298 64.16654 0.46879 -0.32540 0.82113 2.58748 -0.01736 -0.93287 -0.35975 -73.58492 } % Reading block file... Blocfile read: Length: 224 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 224 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 222 % The alignment: >1bit (cluster A) sequence >1brbe (cluster B) sequence >space >1bit_dssp (cluster A) secondary structure from DSSP >1brbe_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * II -- 1 0.95400 0.58666 9.74000 VV BB 1 0.95500 0.50974 9.75000 GG SS 1 0.95800 0.24964 9.78000 GG -- 1 0.95900 0.27940 9.79000 YY EE 1 0.95900 0.32305 9.79000 ET EE 1 0.95700 0.46608 9.77000 CC -- 1 0.95800 0.39785 9.78000 KQ -- 1 0.94800 0.38063 9.68000 AE TT 1 0.92700 0.83027 9.47000 YN TT 1 0.95000 0.53575 9.70000 SS TS 1 0.95700 0.52370 9.77000 QV T- 1 0.95600 0.52730 9.76000 AP TT 1 0.95400 0.51372 9.74000 HY TT 1 0.95500 0.44979 9.75000 QQ EE 1 0.95800 0.31712 9.78000 VV EE 1 0.95900 0.31191 9.79000 SS EE 1 0.95900 0.29232 9.79000 LL EE 1 0.95900 0.29300 9.79000 NN EE 1 0.95800 0.28691 9.78000 SS SS 1 0.95500 0.50934 9.75000 GG SS 1 0.95400 0.50491 9.74000 YY SS 1 0.95600 0.46896 9.76000 HH EE 1 0.95800 0.38231 9.78000 FF EE 1 0.95900 0.36007 9.79000 CC EE 1 0.95900 0.31722 9.79000 GG EE 1 0.95700 0.34919 9.77000 GG EE 1 0.95300 0.50560 9.73000 SS EE 1 0.95600 0.35263 9.76000 LL EE 1 0.95700 0.38332 9.77000 VI -E 1 0.95700 0.41392 9.77000 NN SE 1 0.95700 0.47645 9.77000 ED ST 1 0.95500 0.52499 9.75000 NQ ST 1 0.94900 0.64769 9.69000 WW EE 1 0.95400 0.47061 9.74000 VV EE 1 0.95600 0.27342 9.76000 VV EE 1 0.95100 0.55399 9.71000 SS EE 1 0.95600 0.31579 9.76000 AA -- 1 0.95900 0.33785 9.79000 AA GG 1 0.95700 0.36775 9.77000 HH GG 1 0.95200 0.58949 9.72000 CC GG 1 0.95300 0.41662 9.73000 YY -- 1 0.93500 0.66954 9.55000 KK -- 1 0.88800 1.00747 9.08000 SS SS 1 0.83400 1.33321 8.54000 RR -S 1 0.77500 1.33792 7.95000 VI -- 1 0.86700 0.51246 8.87000 EQ EE 1 0.95700 0.30681 9.77000 VV EE 1 0.95700 0.42866 9.77000 RR EE 1 0.95800 0.32757 9.78000 LL EE 1 0.95900 0.33231 9.79000 GG SS 1 0.95800 0.40788 9.78000 EE -- 1 0.95700 0.35408 9.77000 HH SS 1 0.95600 0.46477 9.76000 NN BB 1 0.95500 0.52739 9.75000 II TT 1 0.95000 0.65836 9.70000 KN TT 1 0.94900 0.53003 9.69000 VV SS 1 0.94000 0.70459 9.60000 TL -- 1 0.92700 0.91827 9.47000 EE -- 1 0.93400 0.87386 9.54000 GG SS 1 0.90700 1.00323 9.27000 SN -- 1 0.91500 0.81814 9.35000 EE -- 1 0.94500 0.25375 9.65000 QQ EE 1 0.95700 0.44551 9.77000 FF EE 1 0.95800 0.38603 9.78000 IV EE 1 0.95900 0.28449 9.79000 SN EE 1 0.95200 0.20031 9.72000 SA EE 1 0.94300 0.68525 9.63000 SA EE 1 0.95000 0.56752 9.70000 RK EE 1 0.94300 0.76186 9.63000 VI EE 1 0.94900 0.72943 9.69000 II EE 1 0.95000 0.72467 9.70000 RK EE 1 0.94900 0.72295 9.69000 HH -- 1 0.95000 0.65296 9.70000 PP TT 1 0.95400 0.53129 9.74000 NN TT 1 0.95600 0.51970 9.76000 YF -- 1 0.95600 0.49138 9.76000 SD B- 1 0.92700 0.41260 9.47000 SR TT 1 0.88600 1.03676 9.06000 YK TT 1 0.92900 0.88037 9.49000 NT TT 1 0.93800 0.77473 9.58000 IL T- 1 0.93400 0.84255 9.54000 DN BT 1 0.93200 0.82245 9.52000 NN TT 1 0.94700 0.53806 9.67000 DD -- 1 0.95000 0.67708 9.70000 II -- 1 0.95500 0.56752 9.75000 MM EE 1 0.95500 0.52493 9.75000 LL EE 1 0.95700 0.25225 9.77000 II EE 1 0.95700 0.45151 9.77000 KK EE 1 0.95700 0.37873 9.77000 LL EE 1 0.95500 0.48690 9.75000 SS SS 1 0.95000 0.40588 9.70000 KS SS 1 0.94100 0.75291 9.61000 PP -- 1 0.94200 0.69405 9.62000 AV -- 1 0.92500 0.91423 9.45000 TK -- 1 0.93400 0.79150 9.54000 LL -- 1 0.93000 0.79538 9.50000 NN SS 1 0.94100 0.76549 9.61000 TA SS 1 0.92700 0.86061 9.47000 YR SS 1 0.93700 0.67372 9.57000 VV -- 1 0.95300 0.46487 9.73000 QA -- 1 0.95500 0.56419 9.75000 PT -- 1 0.95100 0.63427 9.71000 VV -- 1 0.95200 0.44138 9.72000 AA BB 1 0.94500 0.71052 9.65000 LL -- 1 0.95200 0.60602 9.72000 PP -- 1 0.92800 0.54566 9.48000 TS SS 1 0.86000 1.06640 8.80000 SS SS 1 0.92300 0.57287 9.43000 CC -- 1 0.95400 0.51868 9.74000 AA -- 1 0.95400 0.44896 9.74000 PP -- 1 0.94700 0.64488 9.67000 AA TT 1 0.95200 0.49860 9.72000 GG TT 1 0.95800 0.42893 9.78000 TT -- 1 0.95800 0.39563 9.78000 MQ EE 1 0.95700 0.43266 9.77000 CC EE 1 0.95600 0.51068 9.76000 TL EE 1 0.95700 0.52015 9.77000 VI EE 1 0.95700 0.47483 9.77000 SS EE 1 0.95700 0.32873 9.77000 GG EE 1 0.95600 0.49680 9.76000 WW SS 1 0.95700 0.50977 9.77000 GG S- 1 0.95600 0.45756 9.76000 NN -- 1 0.95500 0.48486 9.75000 TT -- 1 0.94600 0.55936 9.66000 ML -- SS -S S S SG SS TV S- AN S- 0 0.00100 2.69569 0.21000 DE -- 0 0.06300 2.39402 0.83000 SP T- 0 0.37600 1.11132 3.96000 ND TS 1 0.86500 1.13477 8.85000 KL BB 1 0.92100 0.58320 9.41000 LL -- 1 0.95600 0.34044 9.76000 QQ EE 1 0.95800 0.28503 9.78000 CC EE 1 0.95700 0.43823 9.77000 LL EE 1 0.95600 0.36570 9.76000 ND EE 1 0.94800 0.55264 9.68000 IA EE 1 0.92500 0.82854 9.45000 PP EE 1 0.94500 0.34004 9.65000 IL BB 1 0.95400 0.47872 9.74000 LL -- 1 0.95400 0.54771 9.74000 SP -- 1 0.95600 0.49926 9.76000 YQ HH 1 0.95200 0.59967 9.72000 SA HH 1 0.94600 0.68692 9.66000 DD HH 1 0.94700 0.63427 9.67000 CC HH 1 0.95400 0.48378 9.74000 NE HH 1 0.95700 0.38607 9.77000 NA HH 1 0.95600 0.49170 9.76000 SS HH 1 0.95500 0.51815 9.75000 YY SS 1 0.95500 0.51610 9.75000 PP TT 1 0.93500 0.58025 9.55000 GG TT 1 0.89100 1.04083 9.11000 MK TT 1 0.93300 0.76885 9.53000 II -- 1 0.94200 0.71450 9.62000 TT -- 1 0.94000 0.64585 9.60000 ND TT 1 0.90800 0.95879 9.28000 AN TT 1 0.92000 0.81939 9.40000 MM EE 1 0.94800 0.47916 9.68000 FV EE 1 0.95600 0.51665 9.76000 CC EE 1 0.95700 0.34374 9.77000 AV EE 1 0.94800 0.49116 9.68000 GG SS 1 0.93700 0.68988 9.57000 YF -- 1 0.94400 0.68809 9.64000 LL TT 1 0.95400 0.55831 9.74000 EE TT 1 0.95600 0.51399 9.76000 GG -- 1 0.95700 0.47907 9.77000 GG SS 1 0.95300 0.59588 9.73000 KK -- 1 0.95400 0.54746 9.74000 DG BB 1 0.95100 0.38268 9.71000 SS -- 1 0.94000 0.75387 9.60000 CC -- 1 0.93600 0.78066 9.56000 QQ TT 1 0.90600 0.99104 9.26000 GG TT 1 0.93200 0.73618 9.52000 DD -- 1 0.95300 0.39309 9.73000 SS TT 1 0.95700 0.39386 9.77000 GG TT 1 0.95800 0.39474 9.78000 GG -- 1 0.95900 0.35908 9.79000 PP EE 1 0.95700 0.38549 9.77000 VV EE 1 0.95500 0.41859 9.75000 VV EE 1 0.95100 0.53351 9.71000 CC EE 1 0.94700 0.69721 9.67000 NN TT 1 0.94400 0.72255 9.64000 GG TT 1 0.94600 0.68068 9.66000 EE EE 1 0.94700 0.71869 9.67000 LL EE 1 0.95300 0.51007 9.73000 QQ EE 1 0.95500 0.47441 9.75000 GG EE 1 0.95600 0.47494 9.76000 VI EE 1 0.95800 0.33484 9.78000 VV EE 1 0.95600 0.33767 9.76000 SS EE 1 0.94900 0.57906 9.69000 WW EE 1 0.95600 0.38622 9.76000 GG -- 1 0.95800 0.40466 9.78000 YY SS 1 0.95300 0.37081 9.73000 GG SS 1 0.94500 0.63299 9.65000 CC SS 1 0.95300 0.49589 9.73000 AA SS 1 0.95600 0.54076 9.76000 EL -- 1 0.95700 0.48448 9.77000 PP TT 1 0.95000 0.46815 9.70000 GD TT 1 0.93500 0.77386 9.55000 NN -- 1 0.94900 0.59059 9.69000 PP -- 1 0.95700 0.41157 9.77000 GD EE 1 0.95700 0.39219 9.77000 VV EE 1 0.95200 0.56652 9.72000 YY EE 1 0.95600 0.34667 9.76000 AT EE 1 0.95800 0.37750 9.78000 KK EE 1 0.95700 0.43536 9.77000 VV GG 1 0.95800 0.43072 9.78000 CC GG 1 0.95400 0.32631 9.74000 IN GG 1 0.94200 0.64133 9.62000 FY -S 1 0.93800 0.61933 9.58000 NV HH 1 0.92100 0.88974 9.41000 DD HH 1 0.89700 1.04270 9.17000 WW HH 1 0.92900 0.74022 9.49000 LI HH 1 0.94900 0.60024 9.69000 TQ HH 1 0.95200 0.60485 9.72000 SD HH 1 0.94800 0.68956 9.68000 TT HH 1 0.94100 0.62277 9.61000 MI HH 1 0.93000 0.77706 9.50000 AA HH 1 0.90000 0.74058 9.20000 SA -H 1 0.80000 1.28634 8.20000 *