% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1ann.ent 1ann { ALL -0.08718 -0.94209 0.32387 163.66211 -0.99617 0.08462 -0.02204 44.16643 -0.00661 -0.32457 -0.94584 61.65658 } /disk3/pdb/pdb1ala.ent 1ala { ALL 0.44995 0.86088 0.23756 156.50510 -0.48020 0.45753 -0.74839 32.36684 -0.75296 0.22264 0.61930 25.05789 } % Reading block file... Blocfile read: Length: 319 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 319 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 317 % The alignment: >1ann (cluster A) sequence >1ala (cluster B) sequence >space >1ann_dssp (cluster A) secondary structure from DSSP >1ala_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * K - Y - T - GR -- 1 0.92200 0.97569 9.42000 GG -- 1 0.92900 0.91085 9.49000 TT SS 1 0.92300 0.89749 9.43000 VV -- 1 0.91800 0.95381 9.38000 KT -- 1 0.92200 0.97453 9.42000 AA -- 1 0.93700 0.72518 9.57000 AF -- 1 0.90700 0.74252 9.27000 SS ST 1 0.84800 1.17220 8.68000 GP ST 1 0.90700 1.01259 9.27000 FF -- 1 0.93100 0.88306 9.51000 ND -- 1 0.91300 1.04912 9.33000 AA HH 1 0.92700 0.96076 9.47000 AR HH 1 0.92100 1.00061 9.41000 EA HH 1 0.91900 0.99699 9.39000 DD HH 1 0.93500 0.86032 9.55000 AA HH 1 0.92400 0.98154 9.44000 QE HH 1 0.92500 0.97749 9.45000 TA HH 1 0.91400 1.04767 9.34000 LL HH 1 0.91600 1.02640 9.36000 RR HH 1 0.91900 1.02388 9.39000 KK HH 1 0.91600 1.04492 9.36000 AA HH 1 0.92600 0.97429 9.46000 MM HH 1 0.92400 1.00402 9.44000 KK SS 1 0.92700 0.97585 9.47000 GG SS 1 0.90900 0.94830 9.29000 LM SS 1 0.86800 1.20177 8.88000 GG SS 1 0.88300 1.20724 9.03000 TT -- 1 0.91200 1.04908 9.32000 DD -- 1 0.92300 0.97748 9.43000 EE HH 1 0.92200 0.97212 9.42000 DE HH 1 0.93100 0.86408 9.51000 AT HH 1 0.92700 0.89395 9.47000 II HH 1 0.92600 0.87782 9.46000 IL HH 1 0.90900 1.00694 9.29000 NK HH 1 0.88500 1.14853 9.05000 VI HH 1 0.92200 0.93706 9.42000 LL HH 1 0.89700 1.05425 9.17000 AT TH 1 0.91700 0.88407 9.37000 YS TH 1 0.94700 0.69978 9.67000 RR SS 1 0.95100 0.65434 9.71000 SN -- 1 0.94200 0.72014 9.62000 TN HH 1 0.93600 0.79173 9.56000 AA HH 1 0.91900 0.95782 9.39000 QQ HH 1 0.93000 0.87719 9.50000 RR HH 1 0.94200 0.81137 9.62000 QQ HH 1 0.93500 0.87739 9.55000 EE HH 1 0.91700 1.01332 9.37000 II HH 1 0.91800 1.01349 9.38000 RA HH 1 0.91600 1.03209 9.36000 TS HH 1 0.89500 1.15344 9.15000 AA HH 1 0.90100 1.13611 9.21000 YF HH 1 0.90300 1.11088 9.23000 KK HH 1 0.89100 1.10484 9.11000 TT HH 1 0.83800 1.30959 8.58000 TL HH 1 0.75600 1.50618 7.76000 IF HH 1 0.71000 1.53847 7.30000 GG -S 1 0.78500 1.36096 8.05000 RR S- 1 0.85900 1.23756 8.79000 DD -- 1 0.87700 1.21302 8.97000 LL HH 1 0.89300 1.15831 9.13000 MV HH 1 0.88200 1.17507 9.02000 DD HH 1 0.89900 1.07317 9.19000 DD HH 1 0.91600 1.00737 9.36000 LL HH 1 0.90200 1.11465 9.22000 KK HH 1 0.90900 1.10068 9.29000 SS HH 1 0.91800 1.03395 9.38000 EE HH 1 0.91100 1.07070 9.31000 LL -- 1 0.91500 1.02719 9.35000 ST -- 1 0.88700 1.15263 9.07000 GG HH 1 0.92300 0.90670 9.43000 NK HH 1 0.94600 0.72358 9.66000 FF HH 1 0.94300 0.77169 9.63000 EE HH 1 0.93300 0.84753 9.53000 QT HH 1 0.94900 0.62548 9.69000 VL HH 1 0.95300 0.64697 9.73000 IM HH 1 0.94700 0.70997 9.67000 LV HH 1 0.93500 0.85738 9.55000 GS HH 1 0.94800 0.70215 9.68000 ML HH 1 0.94900 0.73567 9.69000 MM HH 1 0.94700 0.76002 9.67000 TR SS 1 0.91700 0.80816 9.37000 PP -- 1 0.88900 1.02132 9.09000 TA HT 1 0.80200 1.11387 8.22000 VR HT 1 0.51600 1.71868 5.36000 LI HT 1 0.76800 1.01282 7.88000 YF HH 1 0.90600 1.08748 9.26000 DD HH 1 0.91700 1.00694 9.37000 VA HH 1 0.90800 1.08764 9.28000 QH HH 1 0.89700 1.15159 9.17000 EA HH 1 0.90600 1.07936 9.26000 LL HH 1 0.89400 1.12299 9.14000 RK HH 1 0.87000 1.21319 8.90000 KH HH 1 0.89700 1.10653 9.17000 AA HH 1 0.90300 1.06902 9.23000 MI HH 1 0.84900 1.26678 8.69000 KK SS 1 0.69000 1.49535 7.10000 GG SS 1 0.49100 1.91312 5.11000 AA SS 1 0.63500 1.75062 6.55000 GG SS 1 0.71800 1.59399 7.38000 TT -- 1 0.83900 1.29326 8.59000 DN -- 1 0.87300 1.24080 8.93000 EE HH 1 0.89200 1.07492 9.12000 GK HH 1 0.87000 1.14473 8.90000 CV HH 1 0.86000 1.20733 8.80000 LL HH 1 0.89900 1.06063 9.19000 IT HH 1 0.92800 0.94033 9.48000 EE HH 1 0.92800 0.96173 9.48000 II HH 1 0.92900 0.92373 9.49000 LL HH 1 0.92700 0.88803 9.47000 AA HH 1 0.94100 0.72343 9.61000 SS HH 1 0.94400 0.72951 9.64000 RR SS 1 0.95100 0.54970 9.71000 TT -- 1 0.94800 0.66877 9.68000 PP HH 1 0.94400 0.70431 9.64000 EA HH 1 0.95300 0.55019 9.73000 EE HH 1 0.95500 0.53316 9.75000 IV HH 1 0.95200 0.63875 9.72000 RQ HH 1 0.95300 0.60297 9.73000 RN HH 1 0.94900 0.71169 9.69000 II HH 1 0.94500 0.75198 9.65000 NK HH 1 0.93900 0.78798 9.59000 QQ HH 1 0.93100 0.83433 9.51000 TV HH 1 0.89300 1.06943 9.13000 YY HH 1 0.87700 1.14541 8.97000 QM HH 1 0.82600 1.35610 8.46000 LQ HH 1 0.82200 1.39666 8.42000 QE HH 1 0.82000 1.42681 8.40000 YY HH 1 0.81100 1.45148 8.31000 GE SS 1 0.76500 1.52162 7.85000 RA SS 1 0.79400 1.38774 8.14000 SN -- 1 0.82600 1.35479 8.46000 LL HH 1 0.85000 1.33828 8.70000 EE HH 1 0.83600 1.35469 8.56000 DD HH 1 0.86100 1.26981 8.81000 DK HH 1 0.87000 1.25235 8.90000 II HH 1 0.88100 1.18045 9.01000 RT HH 1 0.87100 1.23746 8.91000 SG HH 1 0.87800 1.22943 8.98000 DE HH 1 0.88500 1.19485 9.05000 TT -- 1 0.84400 1.33021 8.64000 SS -- 1 0.78400 1.48580 8.04000 FG HH 1 0.84100 1.32939 8.61000 MH HH 1 0.82800 1.39747 8.48000 FF HH 1 0.87200 1.24665 8.92000 QQ HH 1 0.88200 1.23053 9.02000 RR HH 1 0.86700 1.29085 8.87000 VL HH 1 0.86400 1.29784 8.84000 LL HH 1 0.88200 1.22087 9.02000 VV HH 1 0.86600 1.27162 8.86000 SV HH 1 0.87900 1.22190 8.99000 LL HH 1 0.89200 1.16399 9.12000 SL HH 1 0.86000 1.29557 8.80000 AQ TT 1 0.85700 1.30021 8.77000 GA -- 1 0.86800 1.23419 8.88000 GN -- 1 0.83500 1.09415 8.55000 RR -- 1 0.75400 1.35574 7.74000 DD -- 1 0.63700 1.67181 6.57000 EP -- 1 0.45800 1.96035 4.78000 SD SS 1 0.56700 1.56647 5.87000 NG -- 0 0.32800 2.04334 3.48000 YR -- 1 0.46500 1.76022 4.85000 LV -- 1 0.74100 1.16672 7.61000 DE -- 1 0.75900 1.36963 7.79000 DE HH 1 0.79100 1.36273 8.11000 AA HH 1 0.80400 1.45770 8.24000 LL HH 1 0.83700 1.32344 8.57000 MV HH 1 0.89700 1.07776 9.17000 RE HH 1 0.89900 1.09570 9.19000 QK HH 1 0.85800 1.28933 8.78000 DD HH 1 0.87000 1.25840 8.90000 AA HH 1 0.87800 1.13624 8.98000 QQ HH 1 0.79800 1.43270 8.18000 DV HH 1 0.76000 1.54402 7.80000 LL HH 1 0.79700 1.34581 8.17000 YF HH 1 0.71100 1.55579 7.31000 ER HH 1 0.62200 1.81022 6.42000 AA HH 1 0.64000 1.75294 6.60000 GG HH 1 0.62200 1.73478 6.42000 EE HH 1 0.50200 2.00732 5.22000 KL TT 1 0.50600 2.02071 5.26000 KK TT 1 0.55100 1.91469 5.71000 WW TT 1 0.62300 1.68144 6.43000 GG -- 1 0.45900 2.03193 4.79000 TT SS 1 0.52200 1.96128 5.42000 DD -- 1 0.53600 1.93127 5.56000 EE HH 1 0.65000 1.77354 6.70000 VE HH 1 0.59100 1.84655 6.11000 KT HH 1 0.72700 1.51294 7.47000 FF HH 1 0.84400 1.14856 8.64000 LI HH 1 0.84200 1.24559 8.62000 TT HH 1 0.80600 1.41540 8.26000 VI HH 1 0.85600 1.21468 8.76000 LL HH 1 0.89900 0.84644 9.19000 CG HH 1 0.86200 1.22708 8.82000 ST HH 1 0.87500 1.24260 8.95000 RR SS 1 0.88500 1.20808 9.05000 NS -- 1 0.87500 1.22127 8.95000 RV HH 1 0.88800 1.15654 9.08000 NS HH 1 0.90600 1.11489 9.26000 HH HH 1 0.91000 1.06518 9.30000 LL HH 1 0.91700 0.94280 9.37000 LR HH 1 0.93700 0.74487 9.57000 HR HH 1 0.93500 0.62937 9.55000 VV HH 1 0.92100 0.81643 9.41000 FF HH 1 0.92200 0.79004 9.42000 DD HH 1 0.87300 1.07799 8.93000 EK HH 1 0.87100 1.18043 8.91000 YY HH 1 0.88000 1.15476 9.00000 KM HH 1 0.82600 1.34024 8.46000 RT HH 1 0.74200 1.50817 7.62000 II HH 1 0.69400 1.64089 7.14000 AS HH 1 0.68300 1.64646 7.03000 QG SS 1 0.59300 1.79586 6.13000 KF SS 1 0.69200 1.63163 7.12000 DQ -- 1 0.79400 1.35219 8.14000 II HG 1 0.87800 1.07093 8.98000 EE HG 1 0.83900 1.17078 8.59000 QE HG 1 0.72600 1.43957 7.46000 ST HG 1 0.68800 1.55158 7.08000 II HS 1 0.58500 1.80046 6.05000 KD H- SR HS EE HS TT -S 0 0.00000 3.08556 0.00000 SS -- 0 0.09000 1.98290 1.10000 GG H- 1 0.63200 1.32226 6.52000 SD HH 1 0.82500 1.29398 8.45000 FL HH 1 0.86500 1.17114 8.85000 EE HH 1 0.89100 1.11844 9.11000 DK HH 1 0.90600 1.02092 9.26000 AL HH 1 0.93100 0.88519 9.51000 LL HH 1 0.94000 0.76575 9.60000 LL HH 1 0.93300 0.87513 9.53000 AA HH 1 0.93900 0.84862 9.59000 IV HH 1 0.94300 0.78144 9.63000 VV HH 1 0.93000 0.86424 9.50000 KK HH 1 0.92900 0.88620 9.49000 CC HH 1 0.92600 0.94033 9.46000 MI HH 1 0.89900 1.01452 9.19000 RR HH 1 0.88200 1.00279 9.02000 NS H- 1 0.81700 1.36119 8.37000 KV HH 1 0.86800 1.21784 8.88000 SP HH 1 0.90700 1.00061 9.27000 AA HH 1 0.89100 1.12233 9.11000 YY HH 1 0.92700 0.90690 9.47000 FF HH 1 0.93500 0.81728 9.55000 AA HH 1 0.92000 0.95888 9.40000 EE HH 1 0.93000 0.91538 9.50000 RT HH 1 0.92800 0.94787 9.48000 LL HH 1 0.93500 0.89884 9.55000 YY HH 1 0.93100 0.93058 9.51000 KY HH 1 0.93700 0.87708 9.57000 SS HH 1 0.93700 0.84801 9.57000 MM HH 1 0.94300 0.76568 9.63000 KK SS 1 0.93400 0.85855 9.54000 GG SS 1 0.92000 0.99106 9.40000 LA SS 1 0.92400 0.96805 9.44000 GG SS 1 0.93200 0.89126 9.52000 TT -- 1 0.93700 0.86781 9.57000 DD -- 1 0.94500 0.74832 9.65000 DD HH 1 0.94200 0.76188 9.62000 DD HH 1 0.95300 0.53238 9.73000 TT HH 1 0.95400 0.61334 9.74000 LL HH 1 0.95100 0.68815 9.71000 II HH 1 0.94400 0.77206 9.64000 RR HH 1 0.95000 0.61118 9.70000 VV HH 1 0.94300 0.79459 9.63000 MM HH 1 0.94700 0.76257 9.67000 VV HH 1 0.94200 0.79905 9.62000 SS HH 1 0.94200 0.77107 9.62000 RR HT 1 0.93300 0.88640 9.53000 AS TT 1 0.91100 1.01787 9.31000 EE TT 1 0.88100 1.19232 9.01000 II TT 1 0.91000 1.08235 9.30000 DD TT 1 0.91900 1.02744 9.39000 ML HH 1 0.90700 1.09969 9.27000 LL HH 1 0.90000 1.05990 9.20000 DD HH 1 0.90700 1.01744 9.27000 II HH 1 0.92600 0.95788 9.46000 RR HH 1 0.92700 0.93950 9.47000 AH HH 1 0.91000 1.07394 9.30000 NE HH 1 0.91000 1.06485 9.30000 FF HH 1 0.92300 0.97911 9.43000 KR HH 1 0.91300 1.05158 9.33000 RK HH 1 0.88600 1.18867 9.06000 LN HH 1 0.88700 1.19298 9.07000 YF HH 1 0.88400 1.19365 9.04000 GA SS 1 0.90400 1.10577 9.24000 KK SS 1 0.91500 1.05527 9.35000 SS -- 1 0.92600 0.97550 9.46000 LL HH 1 0.93500 0.89784 9.55000 YY HH 1 0.93700 0.86072 9.57000 SQ HH 1 0.92100 0.97844 9.41000 FM HH 1 0.92400 0.95316 9.44000 II HH 1 0.93800 0.84506 9.58000 KQ HH 1 0.93800 0.86770 9.58000 GK HH 1 0.93800 0.86915 9.58000 DD HH 1 0.93000 0.95107 9.50000 TT -- 1 0.93200 0.93381 9.52000 SS -- 1 0.91200 1.00280 9.32000 GG HH 1 0.87600 1.16135 8.96000 DD HH 1 0.91200 0.99527 9.32000 YY HH 1 0.93900 0.84007 9.59000 RR HH 1 0.94100 0.82974 9.61000 KK HH 1 0.91700 0.94757 9.37000 VA HH 1 0.93700 0.69915 9.57000 LL HH 1 0.95100 0.66854 9.71000 LL HH 1 0.95100 0.65084 9.71000 IL HH 1 0.94300 0.78511 9.63000 LL HH 1 0.93100 0.85251 9.51000 CC HH 1 0.93200 0.77261 9.52000 GG -- 1 0.91600 0.79215 9.36000 G S D - *